Browse Element(s) Details


Os.48497.1.S1_at

Description gb:AK110868.1
DB_XREF= gi:32996077
TID=Os.48497.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E03, full insert sequence.
FL= gb:AK110868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4888011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48850NANA6+29576976..29577380Auxin responsive protein
LOC_Os06g48860NANA6+29579478..29579900Auxin responsive protein, expressed
LOC_Os06g48870OsAffx.5150.1.S1_at11/116+29589660..29594772CW-type Zinc Finger family protein, expressed
LOC_Os06g48880Os.48497.1.S1_at11/116+29595082..29597297expressed protein
LOC_Os06g48889NANA6+29601567..29601998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48900NANA6+29603899..29610071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48909NANA6+29610919..29611350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48920OsAffx.28179.1.S1_at11/116+29615225..29618291hypothetical protein
LOC_Os06g48930Os.50284.1.S1_at11/116+29619545..29621473expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48497.1.S1_at--239--3451Chr06:29595603..29595627 (25 bp)
CAGTTCTGCGAGTTCAAGTTCTTCA
LOC_Os06g48880
Os.48497.1.S1_at--471--1611Chr06:29595522..29595546 (25 bp)
AGCTGGTTCCTCTGCCGTGGTAGAT
LOC_Os06g48880
Os.48497.1.S1_at--95--2331Chr06:29595465..29595489 (25 bp)
AAAGTGTACACGTTCTGCCCTGACC
LOC_Os06g48880
Os.48497.1.S1_at--1005--2791Chr06:29595390..29595414 (25 bp)
AAGATGGCTCCTTTCAATCCACGAG
LOC_Os06g48880
Os.48497.1.S1_at--278--6651Chr06:29595312..29595336 (25 bp)
GTTGTTGAGGAGCTTCTCCCGGCAT
LOC_Os06g48880
Os.48497.1.S1_at--706--9311Chr06:29595296..29595320 (25 bp)
TCCCGGCATCGATTGTGACTGAGGC
LOC_Os06g48880
Os.48497.1.S1_at--818--6191Chr06:29595276..29595300 (25 bp)
GAGGCACGCCATTGGGTTCACTCTG
LOC_Os06g48880
Os.48497.1.S1_at--335--2011Chr06:29595257..29595281 (25 bp)
ACTCTGCTGTCTTCAGTGAACCATT
LOC_Os06g48880
Os.48497.1.S1_at--1107--3451Chr06:29595244..29595268 (25 bp)
CAGTGAACCATTTGCCTGATTCTAG
LOC_Os06g48880
Os.48497.1.S1_at--373--7191Chr06:29595148..29595172 (25 bp)
GTCGGAGGAACTTCACTGCTTTCAT
LOC_Os06g48880
Os.48497.1.S1_at--1079--2491Chr06:29595088..29595112 (25 bp)
AACATGGTTCCATTCACAGGCCCTT
LOC_Os06g48880
Target Sequence 
CAGTTCTGCGAGTTCAAGTTCTTCAAGCTGGATATAGCAATGGCGCCGTCGCCATTGGACGCCGGCGATCTGGATGGGTT
CAGCTGGTTCCTCTGCCGTGGTAGATCCTCCCGTTTAAGGGAGGAGAAANGTGGGAGNAAAGTGTACACGTTCTGCCCTG
ACCGGCTGTGGGGTGAGAGCAGAACGATCGATCTTGGAAACGGAAAGAAGAGGAAGATGGCTCCTTTCAATCCACGAGGT
TTGATANAGAAATCCATCACAAATGTATATGCACACAATCTGGTTGATGGTGTTGTTGAGGAGCTTCTCCCGGCATCGAT
TGTGACTGAGGCACGCCATTGGGTTCACTCTGCTGTCTTCAGTGAACCATTTGCCTGATTCTAGAATTTGGGTTAATNTG
GACCTGATGATGCTAAATTTTCAAACATGGCATTTCAGTGTAAGCCTAGTGACATTGTCGGAGGAACTTCACTGCTTTCA
TCTNTTGACATTTTCTTCTGGNTAATCACATGATAAAACATGGTTCCATTCACAGGCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis