Browse Element(s) Details


OsAffx.5150.1.S1_at

Description tigr:9634.m04758
TID=OsAffx.5150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyl-binding domain protein MBD108, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4887011/11CW-type Zinc Finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48850NANA6+29576976..29577380Auxin responsive protein
LOC_Os06g48860NANA6+29579478..29579900Auxin responsive protein, expressed
LOC_Os06g48870OsAffx.5150.1.S1_at11/116+29589660..29594772CW-type Zinc Finger family protein, expressed
LOC_Os06g48880Os.48497.1.S1_at11/116+29595082..29597297expressed protein
LOC_Os06g48889NANA6+29601567..29601998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48900NANA6+29603899..29610071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48909NANA6+29610919..29611350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48920OsAffx.28179.1.S1_at11/116+29615225..29618291hypothetical protein
LOC_Os06g48930Os.50284.1.S1_at11/116+29619545..29621473expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5150.1.S1_at--65--1731Chr06:29593848..29593872 (25 bp)
ACCAGAGCTTCTTGAGACTGCGCAA
LOC_Os06g48870
OsAffx.5150.1.S1_at--863--2871Chr06:29594263..29594286 (24 bp)
AAGTGGATCCACTCTGCTGGGCAGC
LOC_Os06g48870
OsAffx.5150.1.S1_at--843--2551Chr06:29594304..29594328 (25 bp)
AACTGCTTGGTGAGCTTGGTGCTTC
LOC_Os06g48870
OsAffx.5150.1.S1_at--378--6411Chr06:29594337..29594361 (25 bp)
GATCTGTTGATGTCAGCCAGTCTGA
LOC_Os06g48870
OsAffx.5150.1.S1_at--1083--7731Chr06:29594362..29594386 (25 bp)
GGTGTCATACCCTGTAGACTTGCAC
LOC_Os06g48870
OsAffx.5150.1.S1_at--233--5771Chr06:29594519..29594543 (25 bp)
GACGTCGAGTTTGTTTCGCTGTGAA
LOC_Os06g48870
OsAffx.5150.1.S1_at--925--8971Chr06:29594540..29594564 (25 bp)
TGAACTCTGGATGCAGTGCCTTTGT
LOC_Os06g48870
OsAffx.5150.1.S1_at--21--7171Chr06:29594589..29594613 (25 bp)
GTCTCATTGTCTATACCTCTCAAGA
LOC_Os06g48870
OsAffx.5150.1.S1_at--877--9811Chr06:29594618..29594642 (25 bp)
TAAACTTCGACCTATATGCCCAATG
LOC_Os06g48870
OsAffx.5150.1.S1_at--546--9811Chr06:29594687..29594711 (25 bp)
TAACTACGTCTTAACATGGCCATGA
LOC_Os06g48870
OsAffx.5150.1.S1_at--596--8331Chr06:29594716..29594740 (25 bp)
GGCTGTAGCATCCACATAACTAGGT
LOC_Os06g48870
Target Sequence 
ACCAGAGCTTCTTGAGACTGCGCAAGTGGATCCACTCTGCTGGGCAGCACCCCCTACACGCAGCGAACTGCTTGGTGAGC
TTGGTGCTTCAACCTCAAGATCTGTTGATGTCAGCCAGTCTGAGGTGTCATACCCTGTAGACTTGCACCAGCCCGAGGAG
TCTGCGCCACTACCTCCACGCACAAAGAAGAAAACTATGAAACGAGGGCGAGTGTCAGCAACGGGGTCTCAATCGACTCC
ACCTGGTTCATCCAAAGATCAGTCTGGAGGATGCGTAAGCGACGTCGAGTTTGTTTCGCTGTGAACTCTGGATGCAGTGC
CTTTGTCTCTGTCAGTCTGCCTTTTGGTTCGTCTCATTGTCTATACCTCTCAAGAAACATAAACTTCGACCTATATGCCC
AATGTTTTGGGTTTGATCAGATGCGCTAAGCATCGAATTTTGGTAATCTAACTACGTCTTAACATGGCCATGACATAGGC
TGTAGCATCCACATAACTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis