Browse Element(s) Details


Os.36473.1.S1_at

Description gb:AK063308.1
DB_XREF= gi:32973326
TID=Os.36473.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta-1,3 glucanase-like protein (B1158C05.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F12, full insert sequence.
FL= gb:AK063308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4409011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44069Os.33373.1.S2_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S2_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44090Os.36473.1.S1_at11/111+25598549..25600354expressed protein
LOC_Os01g44100NANA1+25605750..25606644hypothetical protein
LOC_Os01g44110Os.35858.2.S1_x_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.2.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.1.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44120Os.12043.1.S1_at11/111+25615240..25616005expressed protein
LOC_Os01g44130OsAffx.9099.1.S1_x_at10/111+25618186..25624920Aspartic proteinase oryzasin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36473.1.S1_at--10--8111Chr01:25599796..25599820 (25 bp)
GGACGCCGATCTACGGTGGATCCAC
LOC_Os01g44090
Os.36473.1.S1_at--366--3871Chr01:25599954..25599978 (25 bp)
CTGATCGCGACGGTGTCTCTGATGA
LOC_Os01g44090
Os.36473.1.S1_at--682--691Chr01:25599989..25600013 (25 bp)
ATGATCGCCTACACTTCAGGGTGGC
LOC_Os01g44090
Os.36473.1.S1_at--787--5511Chr01:25600014..25600038 (25 bp)
GAAAATTTCTCTACAGCCGTTGCAG
LOC_Os01g44090
Os.36473.1.S1_at--1015--10311Chr01:25600104..25600128 (25 bp)
TTTAAATTCGCGACGAACACCTCGA
LOC_Os01g44090
Os.36473.1.S1_at--779--4571Chr01:25600146..25600170 (25 bp)
GCGCTATGCAACACGCTAGCTAGCT
LOC_Os01g44090
Os.36473.1.S1_at--189--5151Chr01:25600179..25600203 (25 bp)
GCAAAAGGCTGAGGTGCCCCATCTG
LOC_Os01g44090
Os.36473.1.S1_at--660--4531Chr01:25600194..25600218 (25 bp)
GCCCCATCTGTTTTTAGTGTTCGTC
LOC_Os01g44090
Os.36473.1.S1_at--8--1511Chr01:25600231..25600255 (25 bp)
AGCACGGTGATGCAGCTTCGTACGT
LOC_Os01g44090
Os.36473.1.S1_at--86--9911Chr01:25600251..25600275 (25 bp)
TACGTCCCAGTTCTAGCGGCAGGCA
LOC_Os01g44090
Os.36473.1.S1_at--302--3431Chr01:25600298..25600322 (25 bp)
CAGATTCCACTGTTGTACTTAGAAA
LOC_Os01g44090
Target Sequence 
GGACGCCGATCTACGGTGGATCCACGACCCCTCCTGACTACGGCTCAATGTCCCCTCCCGGCGGCTTCGGGTCAAACTCC
CCTCCTGATTACGGCGACGTCGGCGCCGCACCGGCGACGATGGCCAGCGGCAGGGCGGCGGTGGCGCTCGCCGGCGTCCT
GATCGCGACGGTGTCTCTGATGAGCATGTCAACATGATCGCCTACACTTCAGGGTGGCGAAAATTTCTCTACAGCCGTTG
CAGTTCAAGAATTAGTTGAGAGAGGGGTGCGCCGCGGTGCGTTGGGTGCTGAGACATGCACGCAAAGATTTAAATTCGCG
ACGAACACCTCGATCGATGGATCCCCTGCCGCGCTATGCAACACGCTAGCTAGCTATAGCTCGGCAAAAGGCTGAGGTGC
CCCATCTGTTTTTAGTGTTCGTCAGAAAACTCAGAAGCACGGTGATGCAGCTTCGTACGTCCCAGTTCTAGCGGCAGGCA
GGATATGTTTATATTACAGTTACAGATTCCACTGTTGTACTTAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis