Browse Element(s) Details


Os.18305.1.S2_at

Description gb:AK066579.1
DB_XREF= gi:32976597
TID=Os.18305.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071I03, full insert sequence.
FL= gb:AK101790.1 gb:AK066579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5055011/11Polyprenyl synthetase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50510Os.50276.1.S1_at11/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_at3/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510Os.18001.3.S1_x_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50510OsAffx.17241.1.S1_at1/115+28876953..28882597O-acetyltransferase, putative, expressed
LOC_Os05g50520NANA5+28888150..28892854retrotransposon protein, putative, unclassified
LOC_Os05g50530OsAffx.19258.2.S1_x_at10/115+28893468..28896400hypothetical protein
LOC_Os05g50530OsAffx.24518.2.S1_x_at2/115+28893468..28896400hypothetical protein
LOC_Os05g50530Os.57200.1.S1_x_at1/115+28893468..28896400hypothetical protein
LOC_Os05g50540Os.28943.1.S1_x_at4/115+28896949..28898187retrotransposon protein, putative, unclassified
LOC_Os05g50550Os.18305.1.S2_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50550Os.18305.1.S1_at11/115+28901377..28904741Polyprenyl synthetase family protein, expressed
LOC_Os05g50560Os.52787.1.S1_at7/115+28906389..28912094mitogen-activated protein kinase, putative, expressed
LOC_Os05g50570Os.53101.1.S1_at10/115+28912701..28914261Serine carboxypeptidase family protein, expressed
LOC_Os05g50580Os.56284.1.S1_at11/115+28916940..28918772Serine carboxypeptidase family protein, expressed
LOC_Os05g50590OsAffx.15183.1.S1_at10/115+28918822..28919562hypothetical protein
LOC_Os05g50600Os.27648.1.S1_at11/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50600Os.45963.1.S1_x_at1/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50610Os.29987.2.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.29987.1.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.43567.1.S1_x_at5/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.53217.1.S1_x_at4/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.38172.1.S1_x_at2/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004161molecular_functiondimethylallyltranstransferase activity
GO:0004311molecular_functionfarnesyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18305.1.S2_at--846--5571Chr05:28904200..28904224 (25 bp)
GAAAGTGATTCATTGGCTACTGCAA
LOC_Os05g50550
Os.18305.1.S2_at--563--4851Chr05:28904215..28904239 (25 bp)
GCTACTGCAATCGACTTGGTTCACA
LOC_Os05g50550
Os.18305.1.S2_at--908--5571Chr05:28904280..28904304 (25 bp)
GAAAGGTGACTTGGCTCTCCAAAAT
LOC_Os05g50550
Os.18305.1.S2_at--670--2431Chr05:28904300..28904324 (25 bp)
AAAATTTGCAGTGCCTTCCCAAGAG
LOC_Os05g50550
Os.18305.1.S2_at--189--5871Chr05:28904322..28904346 (25 bp)
GAGCCAGTTCAGAAGTACCCTTGAG
LOC_Os05g50550
Os.18305.1.S2_at--500--6251Chr05:28904381..28904405 (25 bp)
GATGGATTCACTTGATTCCTCTGAA
LOC_Os05g50550
Os.18305.1.S2_at--389--351Chr05:28904425..28904449 (25 bp)
ATAAGATGCTCGCACCCATGTGGGT
LOC_Os05g50550
Os.18305.1.S2_at--977--6771Chr05:28904448..28904472 (25 bp)
GTTAGTAGCTCCCAAAGAAGTTCAT
LOC_Os05g50550
Os.18305.1.S2_at--323--3271Chr05:28904516..28904540 (25 bp)
CAACTTTTTGTTGTGGATCCACCAC
LOC_Os05g50550
Os.18305.1.S2_at--851--6351Chr05:28904531..28904555 (25 bp)
GATCCACCACCAACATGTATCATAG
LOC_Os05g50550
Os.18305.1.S2_at--137--6951Chr05:28904627..28904651 (25 bp)
GTAGTTTCAGCTTCTTGATACACGA
LOC_Os05g50550
Target Sequence 
GAAAGTGATTCATTGGCTACTGCAATCGACTTGGTTCACAGAAGTGGTGGAATAAGAAGGGCGCAGGAGCTTGCAAAGGA
GAAAGGTGACTTGGCTCTCCAAAATTTGCAGTGCCTTCCCAAGAGCCAGTTCAGAAGTACCCTTGAGAACGTGGTGAAAT
ATAATCTTCAGAGGATTGACTGATGGATTCACTTGATTCCTCTGAATCACTTGATTTCTCTGAATATAAGATGCTCGCAC
CCATGTGGGTTAGTAGCTCCCAAAGAAGTTCATCTTGCTAGAATAATGTCGATCTTGGGAAGATGATTACAAGCAGCAAC
TTTTTGTTGTGGATCCACCACCAACATGTATCATAGCATCCTATTTTGCAGTTTATGTAACTACAAGGCAGATAAAGGAA
CTAAGGAAGCATAGTGTATATTTCATAGTAGTTTCAGCTTCTTGATACACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18305.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis