Browse Element(s) Details


OsAffx.32067.1.S1_x_at

Description tigr:9640.m03620
TID=OsAffx.32067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lipoxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3732011/11Lipoxygenase 2.1, chloroplast precursor, putative
LOC_Os12g372603/11Lipoxygenase 2.1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37300OsAffx.22848.3.S1_x_at3/1112+22858126..22864084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37310Os.43567.1.S1_x_at5/1112+22866225..22867206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37310Os.29987.1.S1_at2/1112+22866225..22867206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37310Os.38172.1.S1_x_at2/1112+22866225..22867206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37320OsAffx.32067.1.S1_x_at11/1112+22886566..22889168Lipoxygenase 2.1, chloroplast precursor, putative
LOC_Os12g37330NANA12+22891363..22894318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37340NANA12+22894634..22900732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37350NANA12+22901276..22903277Lipoxygenase 2.2, chloroplast precursor, putative
LOC_Os12g37360Os.15435.1.S1_at11/1112+22906210..22910151GTP-binding protein SAR1A, putative, expressed
LOC_Os12g37370Os.36925.1.A1_at11/1112+22913089..22914534DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32067.1.S1_x_at--230--4231Chr12:22888783..22888807 (25 bp)
CCGACGGGATCTACGTGCCACGCGA
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--531--9191Chr12:22888798..22888822 (25 bp)
TGCCACGCGACGAGGCGTTCACGGA
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--176--6711Chr12:22888838..22888862 (25 bp)
GTTCGCCACCAAGAGGGCGCTGTCG
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--752--3871Chr12:22888866..22888890 (25 bp)
CTGTCGGCGTTCACCACGGCGCGGA
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--31--4911Chr12:22888915..22888939 (25 bp)
GCTTCCCGTCGCTGGCGGCGATCGA
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--458--1832Chr12:22888939..22888963 (25 bp)
ACGCGCTGTACGAGGACGGGTACAA
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--684--9971Chr12:22889010..22889034 (25 bp)
TACCTCGCCGGCATGGTCCAGAGGC
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--392--6072Chr12:22889067..22889091 (25 bp)
GAGTTCAAGGAGGAGCTACGCAAAT
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--33--8771Chr12:22889092..22889116 (25 bp)
TGTTCAAGTTCCAAACGCCCGAGAT
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--1050--2372Chr12:22889104..22889128 (25 bp)
AAACGCCCGAGATTCACGACAGTAC
LOC_Os12g37320
OsAffx.32067.1.S1_x_at--99--6571Chr12:22889114..22889138 (25 bp)
GATTCACGACAGTACGCAACAGAGA
LOC_Os12g37320
Target Sequence 
CCGACGGGATCTACGTGCCACGCGACGAGGCGTTCACGGAGCGGAGGGCCGGCGCGTTCGCCACCAAGAGGGCGCTGTCG
ATGCTGTCGGCGTTCACCACGGCGCGGAGGGTGTCCGGCGACCGGCGGCGGAGCTTCCCGTCGCTGGCGGCGATCGACGC
GCTGTACGAGGACGGGTACAAGAACCGGCCGCCGTCGTCGCAGCCGGAGGCGGTCGACGTCGACGGCTACCTCGCCGGCA
TGGTCCAGAGGCAGGTGAAGCTGTTGCTCAAGGGCGAGGAGGAGGAGTTCAAGGAGGAGCTACGCAAATTGTTCAAGTTC
CAAACGCCCGAGATTCACGACAGTACGCAACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32067.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis