Browse Element(s) Details


Os.36925.1.A1_at

Description gb:AK062352.1
DB_XREF= gi:32972370
TID=Os.36925.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-G06, full insert sequence.
FL= gb:AK062352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3737011/11DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37320OsAffx.32067.1.S1_x_at11/1112+22886566..22889168Lipoxygenase 2.1, chloroplast precursor, putative
LOC_Os12g37330NANA12+22891363..22894318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37340NANA12+22894634..22900732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37350NANA12+22901276..22903277Lipoxygenase 2.2, chloroplast precursor, putative
LOC_Os12g37360Os.15435.1.S1_at11/1112+22906210..22910151GTP-binding protein SAR1A, putative, expressed
LOC_Os12g37370Os.36925.1.A1_at11/1112+22913089..22914534DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed
LOC_Os12g37380Os.32935.1.S1_at11/1112+22915206..22917555RNA pseudouridylate synthase, putative, expressed
LOC_Os12g37390Os.4910.1.S1_at11/1112+22918164..22920305expressed protein
LOC_Os12g37400Os.24951.1.S1_at11/1112+22920535..22925863PROLIFERA protein, putative, expressed
LOC_Os12g37410Os.8070.1.S1_at11/1112+22933838..22935119Ocs-element binding factor 1, putative, expressed
LOC_Os12g37430Os.15323.1.S1_at11/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37430Os.15323.1.S2_at10/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36925.1.A1_at--866--3411Chr12:22913524..22913548 (25 bp)
CAGAAGATTCTGCTCTATGCCTGCA
LOC_Os12g37370
Os.36925.1.A1_at--262--5011Chr12:22913546..22913566 (21 bp)
GCAGGAACTGTGACCACCAGGAGGT
LOC_Os12g37370
Os.36925.1.A1_at--170--2471Chr12:22913942..22913966 (25 bp)
AACAACTGCGTCTACCGGAATGTGG
LOC_Os12g37370
Os.36925.1.A1_at--761--8611Chr12:22913964..22913988 (25 bp)
TGGTGCACCACAGCGCCGGAGAGTT
LOC_Os12g37370
Os.36925.1.A1_at--247--1351Chr12:22913983..22914007 (25 bp)
AGAGTTCACCCAAGTGCTCCAGGAT
LOC_Os12g37370
Os.36925.1.A1_at--1154--6711Chr12:22914079..22914201 (25 bp)
GTTCTTCCAGGCCACTGCCAGAGGG
LOC_Os12g37370
Os.36925.1.A1_at--405--2891Chr12:22914206..22914230 (25 bp)
AAGGGATGACCCTGTTCTTCGTCTG
LOC_Os12g37370
Os.36925.1.A1_at--1045--9011Chr12:22914232..22914256 (25 bp)
TGCAACCCGAGCTGCGGTCACAGAT
LOC_Os12g37370
Os.36925.1.A1_at--40--2411Chr12:22914459..22914483 (25 bp)
AAACATTCTGTGGTCTATTCCTTCC
LOC_Os12g37370
Os.36925.1.A1_at--76--7511Chr12:22914468..22914492 (25 bp)
GTGGTCTATTCCTTCCTTATAAACA
LOC_Os12g37370
Os.36925.1.A1_at--433--6191Chr12:22914504..22914528 (25 bp)
GAGGACAGTTTTCTTGGTGATTCAA
LOC_Os12g37370
Target Sequence 
CAGAAGATTCTGCTCTATGCCTGCAGGAACTGTGACCACCAGGAGGTTGCAGACAACAACTGCGTCTACCGGAATGTGGT
GCACCACAGCGCCGGAGAGTTCACCCAAGTGCTCCAGGATGTCGCCGGCGATCCGACTCTCCCTCGCACCAAGGCGGTCC
GGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTC
GTCTGCTGCAACCCGAGCTGCGGTCACAGATGGAGAGAATGAGATCAATTTGTAGTCAACCAAGTGAAGAAAGTCATTGA
TGCAAATGATCAGAGAGACATATGATTTTGATTTCATCCAAGAGACATTCCATAGAAGCATAGACTGATTGTATGTTTAA
ATTTTTAAAAACACATTCAGGCATCGNTATTTTGTGTAACTTCTGAAGGAAAAGGATCAAGACTANTAGGATAAAACATT
CTGTGGTCTATTCCTTCCTTATAAACAAAGGATGGGATGAGGACAGTTTTCTTGGTGATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36925.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis