Browse Element(s) Details


Os.15323.1.S1_at

Description gb:AK110847.1
DB_XREF= gi:32996056
TID=Os.15323.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C01, full insert sequence.
FL= gb:AK110847.1 gb:AK063760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3743011/11PAPA-1-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37370Os.36925.1.A1_at11/1112+22913089..22914534DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed
LOC_Os12g37380Os.32935.1.S1_at11/1112+22915206..22917555RNA pseudouridylate synthase, putative, expressed
LOC_Os12g37390Os.4910.1.S1_at11/1112+22918164..22920305expressed protein
LOC_Os12g37400Os.24951.1.S1_at11/1112+22920535..22925863PROLIFERA protein, putative, expressed
LOC_Os12g37410Os.8070.1.S1_at11/1112+22933838..22935119Ocs-element binding factor 1, putative, expressed
LOC_Os12g37430Os.15323.1.S1_at11/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37430Os.15323.1.S2_at10/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37440NANA12+22946801..22948797hypothetical protein
LOC_Os12g37450NANA12+22951098..22954310transposon protein, putative, unclassified
LOC_Os12g37460NANA12+22954954..22961109transposon protein, putative, unclassified
LOC_Os12g37470NANA12+22962177..22964983Zinc knuckle family protein
LOC_Os12g37480OsAffx.32068.1.S1_at11/1112+22966329..22967412pectinesterase inhibitor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15323.1.S1_at--480--7531Chr12:22941014..22941038 (25 bp)
GTGGAAGTCCATACTCGTGAGCCTG
LOC_Os12g37430
Os.15323.1.S1_at--205--6471Chr12:22940915..22940939 (25 bp)
GATAATGATTTTGTTACCTCCAGAT
LOC_Os12g37430
Os.15323.1.S1_at--737--6191Chr12:22940834..22940858 (25 bp)
GAGGAACCTACATCTGACAGTGAGC
LOC_Os12g37430
Os.15323.1.S1_at--864--7091Chr12:22940780..22940804 (25 bp)
GTCACTGAATCACCTGCTAATGTAA
LOC_Os12g37430
Os.15323.1.S1_at--1001--2731Chr12:22940757..22940781 (25 bp)
AAGAAGCGAGCCTCTGACAACACGT
LOC_Os12g37430
Os.15323.1.S1_at--838--4491Chr12:22940731..22940755 (25 bp)
GCCGTGCCCTTCAATCATGGATGGA
LOC_Os12g37430
Os.15323.1.S1_at--415--5151Chr12:22940698..22940722 (25 bp)
GCAACAGTGCTATTGAGTTCCCTGA
LOC_Os12g37430
Os.15323.1.S1_at--307--51Chr12:22940687..22940711 (25 bp)
ATTGAGTTCCCTGATGGTTTGCCAC
LOC_Os12g37430
Os.15323.1.S1_at--855--3371Chr12:22940517..22940689 (25 bp)
CACCAGCTCCTTCAAGAGGCAAGAA
LOC_Os12g37430
Os.15323.1.S1_at--1045--3671Chr12:22940521..22940545 (25 bp)
CTTTCTGATGCGGAAATGCTTGCCA
LOC_Os12g37430
Os.15323.1.S1_at--911--2231Chr12:22940332..22940356 (25 bp)
AAATTTTGGGCCTGGATTCTGAGAA
LOC_Os12g37430
Target Sequence 
GTGGAAGTCCATACTCGTGAGCCTGCAAAAAAAACAGGAAGTAGCTCTAAGAAGAATGCTGCAAAGAAAGCTAAAACTAA
GAGCACATCATACGAGATCGATAATGATTTTGTTACCTCCAGATCAAAAAGGGATGGCAATAAAAGGTCTAGGGAATCTA
CTGATGCTGATAATAGTGAAGAGGAACCTACATCTGACAGTGAGCTTGATGCACAAAACAGGAAGCAGAAAGCAGTCACT
GAATCACCTGCTAATGTAAGAAGCGAGCCTCTGACAACACGTCGCCGTGCCCTTCAATCATGGATGGATGGAAACAGCAA
CAGTGCTATTGAGTTCCCTGATGGTTTGCCACCAGCTCCTTCAAGAGGCAAGAAGGATAAGCTTTCTGATGCGGAAATGC
TTGCCAAGAAGGCAGAGGCTGCTCAGCGGCGCAAGATGCAAGTCGAGAAGGCTACTAAAGAAAGCGAGGCTGAAGCTATA
AGGAAAATTTTGGGCCTGGATTCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis