Browse Element(s) Details


Os.15323.1.S2_at

Description gb:AK063760.1
DB_XREF= gi:32973778
TID=Os.15323.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A11, full insert sequence.
FL= gb:AK110847.1 gb:AK063760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3743010/11PAPA-1-like conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37370Os.36925.1.A1_at11/1112+22913089..22914534DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed
LOC_Os12g37380Os.32935.1.S1_at11/1112+22915206..22917555RNA pseudouridylate synthase, putative, expressed
LOC_Os12g37390Os.4910.1.S1_at11/1112+22918164..22920305expressed protein
LOC_Os12g37400Os.24951.1.S1_at11/1112+22920535..22925863PROLIFERA protein, putative, expressed
LOC_Os12g37410Os.8070.1.S1_at11/1112+22933838..22935119Ocs-element binding factor 1, putative, expressed
LOC_Os12g37430Os.15323.1.S1_at11/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37430Os.15323.1.S2_at10/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37440NANA12+22946801..22948797hypothetical protein
LOC_Os12g37450NANA12+22951098..22954310transposon protein, putative, unclassified
LOC_Os12g37460NANA12+22954954..22961109transposon protein, putative, unclassified
LOC_Os12g37470NANA12+22962177..22964983Zinc knuckle family protein
LOC_Os12g37480OsAffx.32068.1.S1_at11/1112+22966329..22967412pectinesterase inhibitor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15323.1.S2_at--838--5371Chr12:22940042..22940066 (25 bp)
GAAGAAGTAGGCCTTCCCAGCATCT
LOC_Os12g37430
Os.15323.1.S2_at--518--2291Chr12:22939882..22939906 (25 bp)
AAATGTGCCGGACCATCATGCACGA
LOC_Os12g37430
Os.15323.1.S2_at--194--4091Chr12:22939856..22939880 (25 bp)
CGCATACCGGTATAGGGACTCCAAG
LOC_Os12g37430
Os.15323.1.S2_at--878--5151Chr12:22939785..22939809 (25 bp)
GCAACGCTTGATTGACGGGACGCTC
LOC_Os12g37430
Os.15323.1.S2_at--706--10191Chr12:22939750..22939774 (25 bp)
TATTTCCCGGTTTCGCAATCAACTC
LOC_Os12g37430
Os.15323.1.S2_at--250--1551Chr12:22939701..22939725 (25 bp)
AGCATTCTCGTCTATATACTGGTGG
LOC_Os12g37430
Os.15323.1.S2_at--908--391Chr12:22939658..22939682 (25 bp)
ATCAGCCGCGGAGATGCACATTTTT
LOC_Os12g37430
Os.15323.1.S2_at--314--9171Chr12:22939508..22939532 (25 bp)
TGCCCTCTGATACCTGTATTGCAGA
LOC_Os12g37430
Os.15323.1.S2_at--1022--2811Chr12:22939428..22939452 (25 bp)
AAGTTCCTTGTGTTTGTTCACTTCT
LOC_Os12g37430
Os.15323.1.S2_at--839--111Chr12:22939401..22939425 (25 bp)
ATTCAGTTTATGCACACACTCGGCC
LOC_Os12g37430
Os.15323.1.S2_at--524--1991Chr12:22939384..22939408 (25 bp)
ACTCGGCCATCATGTCGTTTGTGTA
NONE
Target Sequence 
GAAGAAGTAGGCCTTCCCAGCATCTTCAACTCCAAGCCTTGCAACTACCCTCCCCCGCGAGAGAAATGTGCCGGACCATC
ATGCACGAACGCATACCGGTATAGGGACTCCAAGCTGAATCTCCCTCTCTGCAGCCTGAAATGCTACAAAGCCGTCAATG
GCAACGCTTGATTGACGGGACGCTCGGGCCGTGCCTATTTCCCGGTTTCGCAATCAACTCTGATCTATAATGTTCCCTCA
AGAAAGCATTCTCGTCTATATACTGGTGGAAATAAGATAGGATGATCATCAGCCGCGGAGATGCACATTTTTGGTTGAGT
TGATAGAAAGATACAGCTGTCCAATAAGTGCATATACATGTGTATCATGTATGCATATTTACATACATATAGATTTGTCA
ACCTGTTTTCAGGGCTTGTGAGCAGATGTACTGCTGCTGCCCTCTGATACCTGTATTGCAGATAGTAGACATATACACAT
ATGAAGGAGCAGAAATGTAGAATAAGTTGTTGTACCAAAGTTCCTTGTGTTTGTTCACTTCTTCATTCAGTTTATGCACA
CACTCGGCCATCATGTCGTTTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15323.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis