Browse Element(s) Details


Os.4910.1.S1_at

Description gb:AK059081.1
DB_XREF= gi:32969099
TID=Os.4910.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A11, full insert sequence.
FL= gb:AK059081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3739011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37330NANA12+22891363..22894318retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37340NANA12+22894634..22900732retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g37350NANA12+22901276..22903277Lipoxygenase 2.2, chloroplast precursor, putative
LOC_Os12g37360Os.15435.1.S1_at11/1112+22906210..22910151GTP-binding protein SAR1A, putative, expressed
LOC_Os12g37370Os.36925.1.A1_at11/1112+22913089..22914534DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative, expressed
LOC_Os12g37380Os.32935.1.S1_at11/1112+22915206..22917555RNA pseudouridylate synthase, putative, expressed
LOC_Os12g37390Os.4910.1.S1_at11/1112+22918164..22920305expressed protein
LOC_Os12g37400Os.24951.1.S1_at11/1112+22920535..22925863PROLIFERA protein, putative, expressed
LOC_Os12g37410Os.8070.1.S1_at11/1112+22933838..22935119Ocs-element binding factor 1, putative, expressed
LOC_Os12g37430Os.15323.1.S1_at11/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37430Os.15323.1.S2_at10/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4910.1.S1_at--460--6731Chr12:22919169..22919193 (25 bp)
GTTCTAAACACTCCTGGAGCTGAGA
LOC_Os12g37390
Os.4910.1.S1_at--847--8771Chr12:22919212..22919236 (25 bp)
TGTTTGATGCCCTTCGGCAGGAATT
LOC_Os12g37390
Os.4910.1.S1_at--267--2271Chr12:22919785..22919809 (25 bp)
AAATCCAGTCCTTGAGAAAGCTTCA
LOC_Os12g37390
Os.4910.1.S1_at--905--9951Chr12:22920001..22920025 (25 bp)
TACCCCGGAAAAACCATCGTCATCA
LOC_Os12g37390
Os.4910.1.S1_at--958--5811Chr12:22920036..22920060 (25 bp)
GACCCTATTCTGATACCACTACAAA
LOC_Os12g37390
Os.4910.1.S1_at--916--7771Chr12:22920068..22920092 (25 bp)
GGTGCTGTACCAAATGGCGGTGCTA
LOC_Os12g37390
Os.4910.1.S1_at--329--9091Chr12:22920088..22920112 (25 bp)
TGCTACAAGCCAGCATGATGGGTCT
LOC_Os12g37390
Os.4910.1.S1_at--188--5211Chr12:22920151..22920175 (25 bp)
GAATTTTTTCCTTCCAACAGGCTGA
LOC_Os12g37390
Os.4910.1.S1_at--599--2271Chr12:22920209..22920233 (25 bp)
AAATCCTTCATATCCGTGTAGTTCA
LOC_Os12g37390
Os.4910.1.S1_at--44--731Chr12:22920261..22920285 (25 bp)
ATGATTGCTGTTTATGCTAGCCAGA
LOC_Os12g37390
Os.4910.1.S1_at--1075--4851Chr12:22920276..22920300 (25 bp)
GCTAGCCAGATTCTATGTGACTTGA
LOC_Os12g37390
Target Sequence 
GTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGT
CCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTG
AGAGTNTCTTCTGCCGCCTCAGCGGNATCGACATGATGCCACCTNCACCTTCAACATCTNTTCCTTCTCNCCAAGAGAGA
GAAAGAAACATGGCTNCAGATNGGGGNTGAGAAGAGCAAGNAGATTNATACCCCGGAAAAACCATCGTCATCATCAAGNA
ANAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCT
NAGGATAGCAGCCAGAAGTGATGCTTGTCGNATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTT
TTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTNCAATAGAGTAAAATGTGTTTATGATTGCTGT
TTATGCTAGCCAGATTCTATGTGACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis