Browse Element(s) Details


Os.36875.1.A1_at

Description gb:AK062462.1
DB_XREF= gi:32972480
TID=Os.36875.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D10, full insert sequence.
FL= gb:AK062462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g372107/11hypothetical protein
LOC_Os04g118501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37180OsAffx.32056.1.S1_at11/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37180OsAffx.32056.1.S1_x_at10/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37180OsAffx.30536.1.S1_x_at1/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.1.S1_s_at11/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.3.S1_s_at10/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.4.S1_s_at7/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37200OsAffx.19997.1.S1_at11/1112+22778623..22787433hypothetical protein
LOC_Os12g37210OsAffx.15507.1.S1_at10/1112+22791019..22794011hypothetical protein
LOC_Os12g37210Os.36875.1.A1_at7/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_x_at3/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_at1/1112+22791019..22794011hypothetical protein
LOC_Os12g37220NANA12+22802394..22805725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37230NANA12+22807324..22807785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.41934.1.A1_x_at2/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.14491.2.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.47463.1.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37250Os.53949.1.S1_at11/1112+22815056..22817069transposon protein, putative, Mariner sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36875.1.A1_at--930--5432Chr12:22792423..22792447 (25 bp)
GAACCTCATTTGCATTGATCATTTG
LOC_Os12g37210
Os.36875.1.A1_at--23--172Chr12:22792376..22792400 (25 bp)
ATTATCTTTCATACTGGTGCTCCTG
LOC_Os12g37210
Os.36875.1.A1_at--112--4792Chr12:22792358..22792382 (25 bp)
GCTCCTGTCCATATTAGAATGTCAC
LOC_Os12g37210
Os.36875.1.A1_at--549--6232Chr12:22792293..22792317 (25 bp)
GATGGCTGGTTCAAGGTATATATGC
LOC_Os12g37210
Os.36875.1.A1_at--941--5212Chr12:22792262..22792286 (25 bp)
GAATTACTCTTTTCACTGCTATGTG
LOC_Os12g37210
Os.36875.1.A1_at--169--4871Chr06:11448022..11448046 (25 bp)
GCTATGTGCAGCCAATGATGATTGA
NONE
Os.36875.1.A1_at--782--2152Chr12:22792149..22792173 (25 bp)
ACAGCGGTGTGAAGGTAGTCTCACT
LOC_Os12g37210
Os.36875.1.A1_at--616--2192Chr12:22792118..22792142 (25 bp)
ACAAATCAGGCTGCTGCATATGTGC
LOC_Os12g37210
Os.36875.1.A1_at--1022--8751Chr06:11447850..11447874 (25 bp)
TGTATTTTCTAACGTGCATTGCACG
NONE
Os.36875.1.A1_at--548--7335Chr04:6482564..6482592 (23 bp)
GTGCATTGCACGATTACTAGTGTAT
LOC_Os04g11850
Os.36875.1.A1_at--991--4391Chr06:11447772..11447796 (25 bp)
GCCAACTCCAAACTTGATCCACAAA
NONE
Target Sequence 
GAACCTCATTTGCATTGATCATTTGATGTTGTTCTTTTGTTGTATTGATTATCTTTCATACTGGTGCTCCTGTCCATATT
AGAATGTCACAGTATCAAGTTCACGCCTTTCGGAGGTGTCAGAAACATTCGATGGCTGGTTCAAGGTATATATGCAATTT
TGAATTACTCTTTTCACTGCTATGTGCAGCCAATGATGATTGAGAGGAGGCAATCTTCACACTGGTCAAGGACCTTGCTA
CCGACTTGCAAAATTCACCTTCTGAAATTGTTGGCTACAGCGGTGTGAAGGTAGTCTCACTTCAAAAACAAATCAGGCTG
CTGCATATGTGCGATATATTTGGTTTAAGTTGTATTTTCTAACGTGCATTGCACGATTACTAGTGTATATATATGTGTGT
GCACGCTGGCACCTGGGCTGGAAGCCCAGCCAACTCCAAACTTGATCCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36875.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis