Browse Element(s) Details


OsAffx.19997.1.S1_at

Description tigr:9640.m03608
TID=OsAffx.19997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MYH19.17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3720011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37169NANA12+22756971..22757958NA
LOC_Os12g37180OsAffx.32056.1.S1_at11/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37180OsAffx.32056.1.S1_x_at10/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37180OsAffx.30536.1.S1_x_at1/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.1.S1_s_at11/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.3.S1_s_at10/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.4.S1_s_at7/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37200OsAffx.19997.1.S1_at11/1112+22778623..22787433hypothetical protein
LOC_Os12g37210OsAffx.15507.1.S1_at10/1112+22791019..22794011hypothetical protein
LOC_Os12g37210Os.36875.1.A1_at7/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_x_at3/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_at1/1112+22791019..22794011hypothetical protein
LOC_Os12g37220NANA12+22802394..22805725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37230NANA12+22807324..22807785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.41934.1.A1_x_at2/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.14491.2.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.47463.1.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19997.1.S1_at--781--2151Chr12:22782898..22782922 (25 bp)
ACAGCGCTGGGCAAGGTTGCTCGAA
LOC_Os12g37200
OsAffx.19997.1.S1_at--93--5231Chr12:22782930..22782950 (21 bp)
GAATATCAACTACTTTCCAGGGATG
LOC_Os12g37200
OsAffx.19997.1.S1_at--119--811Chr12:22784538..22784562 (25 bp)
ATGGGCATCGGTGACCCCAAGGGAT
LOC_Os12g37200
OsAffx.19997.1.S1_at--1107--7151Chr12:22784599..22784623 (25 bp)
GTCTCGTCGTCAATGGGTCGGCGCA
LOC_Os12g37200
OsAffx.19997.1.S1_at--779--8391Chr12:22784618..22784642 (25 bp)
GGCGCAGGTGCGTTTGATCGACACT
LOC_Os12g37200
OsAffx.19997.1.S1_at--809--10171Chr12:22784687..22784711 (25 bp)
TATAACTGGCGGCTTCTACTTTCGA
LOC_Os12g37200
OsAffx.19997.1.S1_at--1115--5211Chr12:22787048..22787072 (25 bp)
GAATATGGCCCTGACTTAAGAGTTG
LOC_Os12g37200
OsAffx.19997.1.S1_at--107--3211Chr12:22787087..22787111 (25 bp)
CAAGGCAGCGGCCAATATACCTCTG
LOC_Os12g37200
OsAffx.19997.1.S1_at--126--9971Chr12:22787104..22787128 (25 bp)
TACCTCTGCGAGTATCACCAAGATG
LOC_Os12g37200
OsAffx.19997.1.S1_at--325--8151Chr12:22787191..22787215 (25 bp)
GGACAACAATGGGAACGCCCTCTTC
LOC_Os12g37200
OsAffx.19997.1.S1_at--875--3211Chr12:22787224..22787248 (25 bp)
CAAGGGCATCTACCAAGTCGTCCAT
LOC_Os12g37200
Target Sequence 
ACAGCGCTGGGCAAGGTTGCTCGAATTCGGGTGAATATCAACTACTTTCCAGGGATGCAGCAGCAGCCAGCTGAGATCAT
CGTCATGGGCATCGGTGACCCCAAGGGATGCAGCTTCCATCCCAACATGCCCCTCATGTTCTGCGGTCTCGTCGTCAATG
GGTCGGCGCAGGTGCGTTTGATCGACACTGAGGGTGGAAGGTACAGTGTCATCCACCACGGCAGTCTACCGAATATAACT
GGCGGCTTCTACTTTCGAGCCTCCACGGATCCTTCTCTGAAAGGATGTTACATCTATGAATATGGCCCTGACTTAAGAGT
TGCTATAGAGAGCCCGCAAGGCAGCGGCCAATATACCTCTGCGAGTATCACCAAGATGGGCTGCTCCGCGAGCTCTCCCT
TGCCCTGTGACGACCCCAAGGGCACCGCCACTATCGGCGAGGACAACAATGGGAACGCCCTCTTCCTCACTACCAAGGGC
ATCTACCAAGTCGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis