Browse Element(s) Details


OsAffx.15507.2.S1_x_at

Description tigr:9634.m01937
TID=OsAffx.15507.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1997011/11expressed protein
LOC_Os12g372103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19960OsAffx.15506.1.S1_at11/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19960Os.20476.2.S1_a_at1/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19970OsAffx.15507.2.S1_at11/116+11449220..11449805expressed protein
LOC_Os06g19970OsAffx.15507.2.S1_x_at11/116+11449220..11449805expressed protein
LOC_Os06g19980OsAffx.15508.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_s_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19990Os.12376.1.S1_at11/116+11460524..11463788expressed protein
LOC_Os06g19990Os.3053.1.A1_at1/116+11460524..11463788expressed protein
LOC_Os06g20000OsAffx.15509.1.S1_at11/116+11468461..11468730hypothetical protein
LOC_Os06g20010OsAffx.4877.1.S1_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20010OsAffx.4877.1.S1_x_at11/116+11473474..11473743RNA recognition motif, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15507.2.S1_x_at--406--571Chr06:11449727..11449751 (25 bp)
ATCCTTCATCCATTGGCGTCGCAGT
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--492--3531Chr06:11449721..11449745 (25 bp)
CATCCATTGGCGTCGCAGTGGTGCG
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--907--8691Chr06:11449468..11449492 (25 bp)
TGTGCTGCCATATCCTCGCTGCGAG
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--518--3831Chr06:11449450..11449474 (25 bp)
CTGCGAGCCCTGTCTCGCAGAGAAA
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--631--4131Chr06:11449349..11449373 (25 bp)
CGCTTTGCCTGCAGGGCTCCGGTGC
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--71--4412Chr12:22793530..22793554 (25 bp)
GCCAAAGCTGCTGCGTGAGGATAGA
LOC_Os12g37210
OsAffx.15507.2.S1_x_at--226--6172Chr12:22793514..22793538 (25 bp)
GAGGATAGAGGCAGCCTGCGATCTA
LOC_Os12g37210
OsAffx.15507.2.S1_x_at--766--10031Chr06:11449293..11449317 (25 bp)
TAGAGGCAGCCTGCGATCTAAGTCA
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--104--1691Chr06:11449286..11449310 (25 bp)
AGCCTGCGATCTAAGTCACTGGTGG
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--373--3831Chr06:11449283..11449307 (25 bp)
CTGCGATCTAAGTCACTGGTGGAAA
LOC_Os06g19970
OsAffx.15507.2.S1_x_at--1069--2432Chr12:22793466..22793501 (25 bp)
AAAAGGCCGAATGTTTTCTGCTGTT
LOC_Os12g37210
Target Sequence 
ATCCTTCATCCATTGGCGTCGCAGTGGTGCGCTCTTCCGTTGGTGCTGGTGGGGCTACTCCGTCTCCGCCGCCAGCGCAG
TCACCGCCTCGGCCCTCCTCGCCTCACCTGTGCCACGGTTCCAAAACCCCAACCTCCAGGCTCCAGCCGCCCACTACACC
TCCACTCCTCTCACGTCGTGCTACACCCTGCCGGCGGCCTGTAACGGCACCACAAGCCCTGTCCTCTCCGCACCCCCCGG
GGGCCGAACCTCCTTGCCGTGTGCTGCCATATCCTCGCTGCGAGCCCTGTCTCGCAGAGAAACCTGGACGCCATACCTCC
TAGCCGTCGCCACGAACAGCTCCATCGGAAACTCCGCACCCGCCATATATGCCTTCGTCGCTTTGCCTGCAGGGCTCCGG
TGCGGAGCGTGGGGCCAAAGCTGCTGCGTGAGGATAGAGGCAGCCTGCGATCTAAGTCACTGGTGGAAAAGGGGAGCAAA
AGGCCGAATGTTTTCTGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15507.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis