Browse Element(s) Details

Os.18071.1.S1_s_at

Description

gb:CR284744
DB_XREF= gi:44671310
DB_XREF=CR284744
CLONE=y760g10p3
TID=Os.18071.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18071 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g19980	11/11	Myb-like DNA-binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g19960	OsAffx.15506.1.S1_at	11/11	6	+	11438153..11446644	Aconitase family containing protein
LOC_Os06g19960	Os.20476.2.S1_a_at	1/11	6	+	11438153..11446644	Aconitase family containing protein
LOC_Os06g19970	OsAffx.15507.2.S1_at	11/11	6	+	11449220..11449805	expressed protein
LOC_Os06g19970	OsAffx.15507.2.S1_x_at	11/11	6	+	11449220..11449805	expressed protein
LOC_Os06g19980	OsAffx.15508.1.S1_at	11/11	6	+	11452024..11460167	Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980	Os.18071.1.S1_s_at	11/11	6	+	11452024..11460167	Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980	Os.18071.1.S1_at	11/11	6	+	11452024..11460167	Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19990	Os.12376.1.S1_at	11/11	6	+	11460524..11463788	expressed protein
LOC_Os06g19990	Os.3053.1.A1_at	1/11	6	+	11460524..11463788	expressed protein
LOC_Os06g20000	OsAffx.15509.1.S1_at	11/11	6	+	11468461..11468730	hypothetical protein
LOC_Os06g20010	OsAffx.4877.1.S1_at	11/11	6	+	11473474..11473743	RNA recognition motif, putative
LOC_Os06g20010	OsAffx.4877.1.S1_x_at	11/11	6	+	11473474..11473743	RNA recognition motif, putative
LOC_Os06g20020	NA	NA	6	+	11475505..11476803	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g20030	Os.49962.1.S1_at	11/11	6	+	11482109..11485822	group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20030	Os.39087.1.S1_at	1/11	6	+	11482109..11485822	group II intron splicing factor CRS1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0008026	molecular_function	ATP-dependent helicase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18071.1.S1_s_at--215--533	1	Chr06:11459593..11459617 (25 bp)	GAAGTGTTGTCGAAGCGCTACTGCC	LOC_Os06g19980
Os.18071.1.S1_s_at--413--165	1	Chr06:11459606..11459630 (25 bp)	AGCGCTACTGCCCAGAAATGGTTGA	LOC_Os06g19980
Os.18071.1.S1_s_at--863--815	1	Chr06:11459652..11459676 (25 bp)	GGAAATGTCATCCACCAAAACCTTC	LOC_Os06g19980
Os.18071.1.S1_s_at--1009--309	1	Chr06:11459698..11459722 (25 bp)	AATAGCCGTCTTAGTTACATCTCGC	LOC_Os06g19980
Os.18071.1.S1_s_at--741--987	1	Chr06:11459713..11459737 (25 bp)	TACATCTCGCCTCGTTCAAAGGATA	LOC_Os06g19980
Os.18071.1.S1_s_at--660--29	1	Chr06:11459735..11459759 (25 bp)	ATAGCATTAGCCGTCTTACATCTCG	LOC_Os06g19980
Os.18071.1.S1_s_at--260--1049	1	Chr06:11459750..11459774 (25 bp)	TTACATCTCGCCTGTTGTTGAAATG	LOC_Os06g19980
Os.18071.1.S1_s_at--758--229	1	Chr06:11459770..11459794 (25 bp)	AAATGTGTTCTGTGGCCTGTACAAA	LOC_Os06g19980
Os.18071.1.S1_s_at--58--651	1	Chr06:11459859..11459883 (25 bp)	GATAGGCCATCTATGTGCACACGGG	LOC_Os06g19980
Os.18071.1.S1_s_at--950--865	1	Chr06:11459950..11459974 (25 bp)	TGTGGCGTCCAATCATCTTCGTATG	LOC_Os06g19980
Os.18071.1.S1_s_at--862--881	1	Chr06:11460057..11460081 (25 bp)	TGTTGATCTGCCTGCTTTTGTGATC	LOC_Os06g19980

Target Sequence

GAAGTGTTGTCGAAGCGCTACTGCCCAGAAATGGTTGACTATAGGGAAGGGGAAGCGTAGGAAATGTCATCCACCAAAAC
CTTCCCAATCCGTTGAAAGGATAGCAATAGCCGTCTTAGTTACATCTCGCCTCGTTCAAAGGATAGCATTAGCCGTCTTA
CATCTCGCCTGTTGTTGAAATGTGTTCTGTGGCCTGTACAAAATGTTTGGCTTTTGGAATGCANGGCACTGATGTTTAGC
NGCCCAATGCACTTGGGAATTGTTTGGATAGGCCATCTATGTGCACACGGGNGACGACACTCATCCAGCAACCAGGGCAC
CCCCTACCCCCTCTCCCCGGGCCATGGTAAGCATGGCTGTGGCGTCCAATCATCTTCGTATGGAAAGTGCTGAACATTAC
GATTTAAACTNANNATGGATGGAGTCATGAACCCTGTAATTTCNTCACACCACAGGTGCATTCTTNNNTGTTGATCTGCC
TGCTTTTGTGATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis