Browse Element(s) Details


OsAffx.15508.1.S1_at

Description tigr:9634.m01938
TID=OsAffx.15508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1998011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19960OsAffx.15506.1.S1_at11/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19960Os.20476.2.S1_a_at1/116+11438153..11446644Aconitase family containing protein
LOC_Os06g19970OsAffx.15507.2.S1_at11/116+11449220..11449805expressed protein
LOC_Os06g19970OsAffx.15507.2.S1_x_at11/116+11449220..11449805expressed protein
LOC_Os06g19980OsAffx.15508.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_s_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19990Os.12376.1.S1_at11/116+11460524..11463788expressed protein
LOC_Os06g19990Os.3053.1.A1_at1/116+11460524..11463788expressed protein
LOC_Os06g20000OsAffx.15509.1.S1_at11/116+11468461..11468730hypothetical protein
LOC_Os06g20010OsAffx.4877.1.S1_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20010OsAffx.4877.1.S1_x_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20020NANA6+11475505..11476803Zinc finger, C2H2 type family protein, expressed
LOC_Os06g20030Os.49962.1.S1_at11/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20030Os.39087.1.S1_at1/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15508.1.S1_at--144--4231Chr06:11459523..11459547 (25 bp)
CCGTCAACGATGGAACGAGATGGTC
LOC_Os06g19980
OsAffx.15508.1.S1_at--738--3251Chr06:11459527..11459551 (25 bp)
CAACGATGGAACGAGATGGTCCGCT
LOC_Os06g19980
OsAffx.15508.1.S1_at--828--1871Chr06:11459529..11459553 (25 bp)
ACGATGGAACGAGATGGTCCGCTAT
LOC_Os06g19980
OsAffx.15508.1.S1_at--636--6231Chr06:11459531..11459555 (25 bp)
GATGGAACGAGATGGTCCGCTATTT
LOC_Os06g19980
OsAffx.15508.1.S1_at--1121--8491Chr06:11459533..11459557 (25 bp)
TGGAACGAGATGGTCCGCTATTTAG
LOC_Os06g19980
OsAffx.15508.1.S1_at--236--5451Chr06:11459535..11459559 (25 bp)
GAACGAGATGGTCCGCTATTTAGGT
LOC_Os06g19980
OsAffx.15508.1.S1_at--1025--1851Chr06:11459537..11459561 (25 bp)
ACGAGATGGTCCGCTATTTAGGTGG
LOC_Os06g19980
OsAffx.15508.1.S1_at--838--2911Chr06:11459566..11459590 (25 bp)
AAGGAGAAGCCCTTCATTGAACAAG
LOC_Os06g19980
OsAffx.15508.1.S1_at--69--8071Chr06:11459568..11459592 (25 bp)
GGAGAAGCCCTTCATTGAACAAGTG
LOC_Os06g19980
OsAffx.15508.1.S1_at--1121--131Chr06:11459988..11460012 (25 bp)
ATTACGATTTAAACTATGATGGATG
LOC_Os06g19980
OsAffx.15508.1.S1_at--1151--10471Chr06:11459996..11460020 (25 bp)
TTAAACTATGATGGATGGAGTCATG
LOC_Os06g19980
Target Sequence
CCGTCAACGATGGAACGAGATGGTCCGCTATTTAGGTGGCCACAAGGAGAAGCCCTTCATTGAACAAGTGGAAGTGTTGT
CGAAGCGCTACTGCCCAGAAATGGTTGACTATAGGGAAGGGGAAGCGTAGGAAATGTCATCCACCAAAACCTTCCCAATC
CGTTGAAAGGATAGCAATAGCCGTCTTAGTTACATCTCGCCTCGTTCAAAGGATAGCATTAGCCGTCTTACATCTCGCCT
GTTGTTGAAATGTGTTCTGTGGCCTGTACAAAATGTTTGGCTTTTGGAATGCATGGCACTGATGTTTAGCCGCCCAATGC
ACTTGGGAATTGTTTGGATAGGCCATCTATGTGCACACGGGCGACGACACTCATCCAGCAACCAGGGCACCCCCTACCCC
CTCTCCCCGGGCCATGGTAAGCATGGCTGTGGCGTCCAATCATCTTCGTATGGAAAGTGCTGAACATTACGATTTAAACT
ATGATGGATGGAGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis