Browse Element(s) Details


OsAffx.15507.1.S1_at

Description tigr:9640.m03609
TID=OsAffx.15507.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3721010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37180OsAffx.32056.1.S1_at11/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37180OsAffx.32056.1.S1_x_at10/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37180OsAffx.30536.1.S1_x_at1/1112+22766258..22770556transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.1.S1_s_at11/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.3.S1_s_at10/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37190OsAffx.10637.4.S1_s_at7/1112+22772471..22776157transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37200OsAffx.19997.1.S1_at11/1112+22778623..22787433hypothetical protein
LOC_Os12g37210OsAffx.15507.1.S1_at10/1112+22791019..22794011hypothetical protein
LOC_Os12g37210Os.36875.1.A1_at7/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_x_at3/1112+22791019..22794011hypothetical protein
LOC_Os12g37210OsAffx.15507.2.S1_at1/1112+22791019..22794011hypothetical protein
LOC_Os12g37220NANA12+22802394..22805725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37230NANA12+22807324..22807785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.41934.1.A1_x_at2/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.14491.2.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.47463.1.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37250Os.53949.1.S1_at11/1112+22815056..22817069transposon protein, putative, Mariner sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15507.1.S1_at--518--8691Chr12:22793690..22793714 (25 bp)
TGTGCTACCATATCCTCGCCGCAAG
LOC_Os12g37210
OsAffx.15507.1.S1_at--746--4111Chr12:22793671..22793695 (25 bp)
CGCAAGCCCTGTCTCGCAAAGAAAC
LOC_Os12g37210
OsAffx.15507.1.S1_at--115--3211NONE
CAAGGCTTCGGTGAAACTGACAGAC
NONE
OsAffx.15507.1.S1_at--435--2532Chr12:22793054..22793078 (25 bp)
AACTGACAGACCCAAGGAAGTACTT
LOC_Os12g37210
OsAffx.15507.1.S1_at--868--8192Chr12:22793039..22793063 (25 bp)
GGAAGTACTTTGTGCAGCACGCCTA
LOC_Os12g37210
OsAffx.15507.1.S1_at--502--5051Chr12:22793026..22793050 (25 bp)
GCAGCACGCCTACCGTATACTGCTG
LOC_Os12g37210
OsAffx.15507.1.S1_at--3--4771Chr12:22792520..22793019 (25 bp)
GCTCGGGCAATGTCAAAGGCTAATT
LOC_Os12g37210
OsAffx.15507.1.S1_at--967--2591Chr12:22791122..22791146 (25 bp)
AACCCTTCGGCAACAGATTAGGCCA
LOC_Os12g37210
OsAffx.15507.1.S1_at--637--6551Chr12:22791107..22791131 (25 bp)
GATTAGGCCATCCAGTCTTCTATTT
LOC_Os12g37210
OsAffx.15507.1.S1_at--565--9531Chr12:22791089..22791113 (25 bp)
TCTATTTCACCCTGCTGCGTGATGA
LOC_Os12g37210
OsAffx.15507.1.S1_at--110--9151Chr12:22791074..22791098 (25 bp)
TGCGTGATGAGCTAGTGGGCACTAA
LOC_Os12g37210
Target Sequence 
TGTGCTACCATATCCTCGCCGCAAGCCCTGTCTCGCAAAGAAACCTGGACGCCATACCTCCTAGCCGTCGCCACGAACAG
CTCCATCGGAAACTCCACCCGCCATATATGCCTTCGTCGCTTTGCCTGCAAGGCTTCGGTGAAACTGACAGACCCAAGGA
AGTACTTTGTGCAGCACGCCTACCGTATACTGCTGCATGGAGCTCGGGCAATGTCAAAGGCTAATTCAATGGACAATGCA
GGAAGCTCTAGACCACAATTGTCTGTAACAACAGTATCAAGTTCATGCCTTTCGGAGGTGTCAGAAACATTCGATGGCTG
GTTCAAGCCAATGATGATAGAGGAGGCAATCTTCACACTGGTCAAGGACCTTGCTACCGACTTGCAAAATTCACCTTATG
AAATTATTGGCTACAGCGGTGTGAAGCAGCGTCGGGGGTATTCCCAACCCTTCGGCAACAGATTAGGCCATCCAGTCTTC
TATTTCACCCTGCTGCGTGATGAGCTAGTGGGCACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis