Browse Element(s) Details


Os.17765.1.A1_at

Description gb:AK106590.1
DB_XREF= gi:32991799
TID=Os.17765.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-G04, full insert sequence.
FL= gb:AK106590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3716010/11Cell division protein ftsZ, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37180NANA5+21647720..21648037transposon protein, putative, unclassified
LOC_Os05g37190Os.54232.1.S1_at11/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.29835.1.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed
LOC_Os05g37190OsAffx.17417.2.S1_x_at2/115+21654125..21656515Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010020biological_processchloroplast fission
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17765.1.A1_at--35--3071Chr05:21629424..21629448 (25 bp)
AATCTCATTTTTGGCTCTGTTATTG
LOC_Os05g37160
Os.17765.1.A1_at--1122--8311Chr05:21629412..21629436 (25 bp)
GGCTCTGTTATTGATCCATCGTATA
LOC_Os05g37160
Os.17765.1.A1_at--936--5911Chr05:21629234..21629258 (25 bp)
GAGCATAACCCTGATTGCAACTGGA
LOC_Os05g37160
Os.17765.1.A1_at--352--1271Chr05:21629067..21629091 (25 bp)
AGATAACAGCCGGAGCCACAGCAGT
LOC_Os05g37160
Os.17765.1.A1_at--216--2151Chr05:21629050..21629074 (25 bp)
ACAGCAGTTGGTTTTCTTCATCATC
LOC_Os05g37160
Os.17765.1.A1_at--146--1471NONE
AGAAGGCCCAACATTGCAGATCCCA
NONE
Os.17765.1.A1_at--880--4631Chr05:21628974..21628998 (25 bp)
GCGTTCAGGGTTTTCCAGAGGCTGA
LOC_Os05g37160
Os.17765.1.A1_at--649--4351Chr05:21628960..21628984 (25 bp)
CCAGAGGCTGAAACTTCGGCTTGAA
LOC_Os05g37160
Os.17765.1.A1_at--873--1431Chr05:21628920..21628944 (25 bp)
AGAACTCTCACTAGTTTAGCGCACC
LOC_Os05g37160
Os.17765.1.A1_at--229--211Chr05:21628783..21628807 (25 bp)
ATTTGATTCCTGAACCGTACTGTGC
LOC_Os05g37160
Os.17765.1.A1_at--1021--2611Chr05:21628771..21628795 (25 bp)
AACCGTACTGTGCTTCCTGAATGGA
LOC_Os05g37160
Target Sequence 
AATCTCATTTTTGGCTCTGTTATTGATCCATCGTATACTGGTCAAGTGAGCATAACCCTGATTGCAACTGGATTCAAGCG
TCAGGAGGAGGCTGAGAGTCGACAGGCTGGTGGAGATAACAGCCGGAGCCACAGCAGTTGGTTTTCTTCATCATCCCAGG
AAGAAGGCCCAACATTGCAGATCCCAGAGTTTTTGCAGAGGAAAGGGCGTTCAGGGTTTTCCAGAGGCTGAAACTTCGGC
TTGAAGAAAAAAAAAAACTTAGAACTCTCACTAGTTTAGCGCACCAGCTTTCTTTCTCGTGCTTTCCTCTTCTTCTTTTT
TTAATTTTGTTAGGAGTTCGATATGTTTCAAGTTTATTTTTGCTGCTCAGATTTAGATGATAATGTTATGAGCAGATATT
TGATTCCTGAACCGTACTGTGCTTCCTGAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17765.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis