Browse Element(s) Details


Os.5264.1.S1_at

Description gb:AK071068.1
DB_XREF= gi:32981091
TID=Os.5264.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081K10, full insert sequence.
FL= gb:AK071068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3715011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37180NANA5+21647720..21648037transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5264.1.S1_at--84--8751Chr05:21625693..21626110 (25 bp)
TGTACTTGGCTTGCTGGTTTTGCAT
LOC_Os05g37150
Os.5264.1.S1_at--368--1511Chr05:21625654..21625678 (25 bp)
AGCAGTATCCGGTTTTGGTCCCTGT
LOC_Os05g37150
Os.5264.1.S1_at--52--8831Chr05:21625632..21625656 (25 bp)
TGTTGTGTACGTGCCAATCGCCATG
LOC_Os05g37150
Os.5264.1.S1_at--385--3051Chr05:21625617..21625641 (25 bp)
AATCGCCATGTTGCACTGTACCAAT
LOC_Os05g37150
Os.5264.1.S1_at--637--7971Chr05:21625563..21625587 (25 bp)
GGATCCGTGTGCTATTGAGCACCAT
LOC_Os05g37150
Os.5264.1.S1_at--467--10191Chr05:21625529..21625553 (25 bp)
TATATTGCCATTCGAGGGAGACATA
LOC_Os05g37150
Os.5264.1.S1_at--617--6871Chr05:21625503..21625527 (25 bp)
GTTTGGCGTCATTTGATTGCTCCTA
LOC_Os05g37150
Os.5264.1.S1_at--609--6591Chr05:21625489..21625513 (25 bp)
GATTGCTCCTAAGTAGCCTGGACCA
LOC_Os05g37150
Os.5264.1.S1_at--698--9991Chr05:21625476..21625500 (25 bp)
TAGCCTGGACCAGCACTGACATGAG
LOC_Os05g37150
Os.5264.1.S1_at--742--1971Chr05:21625462..21625486 (25 bp)
ACTGACATGAGCTGTGATTTTCCAC
LOC_Os05g37150
Os.5264.1.S1_at--254--10591Chr05:21625318..21625342 (25 bp)
TTCTCCAGATTTTTACGGTAGCAAT
LOC_Os05g37150
Target Sequence 
TGTACTTGGCTTGCTGGTTTTGCATGTGAGATGACTGGGAGCAGTATCCGGTTTTGGTCCCTGTTGTGTACGTGCCAATC
GCCATGTTGCACTGTACCAATCAATCATTTTCATAGTTCCTGATGGNGGAGGATCCGTGTGCTATTGAGCACCATTTGCT
ATTTTATATTGCCATTCGAGGGAGACATAGGTTTGGCGTCATTTGATTGCTCCTAAGTAGCCTGGACCAGCACTGACATG
AGCTGTGATTTTCCACAAATCCACATTTTTTGTTCAGAACTGCCACGTGAATACACGATGTATTGTATTGGCTTGTTTGT
GATACTTGCACAATCAAGTAATCAACCATTGTCTGATCAGTAAGATGACAAAGTNTTCTCCAGATTTTTACGGTAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis