Browse Element(s) Details


Os.53494.1.S1_x_at

Description gb:AK072943.1
DB_XREF= gi:32982966
TID=Os.53494.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148N05, full insert sequence.
FL= gb:AK072943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3713011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37090OsAffx.27201.1.S1_at11/115+21592507..21593007hypothetical protein
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed
LOC_Os05g37170Os.23469.1.S1_at10/115+21632554..21641305Transcription factor HBP-1b, putative, expressed
LOC_Os05g37170Os.53949.1.S1_at1/115+21632554..21641305Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53494.1.S1_x_at--211--7811Chr05:21617376..21617400 (25 bp)
GGTCGATCCTATCTCAGTGGCAAGA
LOC_Os05g37130
Os.53494.1.S1_x_at--1000--5671Chr05:21617343..21617367 (25 bp)
GACATTTTCGCATCTGGTGCGTCAT
LOC_Os05g37130
Os.53494.1.S1_x_at--513--5571Chr05:21617316..21617340 (25 bp)
GAAAGATGTCGTTCAGTTAGCGCAT
LOC_Os05g37130
Os.53494.1.S1_x_at--329--3451Chr05:21617303..21617327 (25 bp)
CAGTTAGCGCATTTCCCAGGGAGGT
LOC_Os05g37130
Os.53494.1.S1_x_at--678--6811Chr05:21617251..21617275 (25 bp)
GTTTTAGGATTCTAGCTCTGGCTAT
LOC_Os05g37130
Os.53494.1.S1_x_at--678--8491Chr05:21617233..21617257 (25 bp)
TGGCTATCTCTTCAGAACTCTAAAC
LOC_Os05g37130
Os.53494.1.S1_x_at--543--5351Chr05:21617183..21617207 (25 bp)
GAAGATTCTAGTTTGCGTCATGGGC
LOC_Os05g37130
Os.53494.1.S1_x_at--1084--1271Chr05:21616939..21616963 (25 bp)
AGATCTCTTACTATTCCTCACAATT
LOC_Os05g37130
Os.53494.1.S1_x_at--380--5351Chr05:21616897..21616921 (25 bp)
GAAGAGTACTCTGTCGCTAAGTTGA
LOC_Os05g37130
Os.53494.1.S1_x_at--479--9151Chr05:21616856..21616880 (25 bp)
TGCGAGGACAGCGTTTTCATTCATT
LOC_Os05g37130
Os.53494.1.S1_x_at--1010--2751Chr05:21616811..21616834 (24 bp)
AAGACTGTACTTTACCTGCTTTTGC
LOC_Os05g37130
Target Sequence 
GGTCGATCCTATCTCAGTGGCAAGATATGTTTGGACATTTTCGCATCTGGTGCGTCATGTGAAAGATGTCGTTCAGTTAG
CGCATTTCCCAGGGAGGTAGGCCGGTGGTTGATCGGTTGTTGCATGTTTTAGGATTCTAGCTCTGGCTATCTCTTCAGAA
CTCTAAACTGACCGACCAACCAACGCCCAACGAGAAGATTCTAGTTTGCGTCATGGGCAAGAATCGAATAAGCATTTGGC
ACAGAAGTGGGCATTATTCAGAAGCCATTGATTGTTCATCAATTTCGTCAGGAACAGAGCATTAAACTAACTAAATCCTC
AATAATTTTCTCATTTCGTTATCTTAATTGTGGAATCTTGGAAGAATTGAATTGACTGTTTGTTGTAGAAAATTAGGTGG
GCTTTTTTTTTCATTCTAGCATATGGATGTTTAGGCAGATCTCTTACTATTCCTCACAATTGAATTAGGTAGGAGTAAGA
AGAGTACTCTGTCGCTAAGTTGACAAAATGTGGAATATATGCGAGGACAGCGTTTTCATTCATTGTATAGTGGAGATGAT
CAAACAAGACTGTACTTTACCTGCTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53494.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis