Browse Element(s) Details


OsAffx.27202.1.S1_at

Description tigr:9633.m03421
TID=OsAffx.27202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37070OsAffx.19542.3.S1_x_at6/115+21578164..21582386retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g37080Os.51783.1.S1_at11/115+21585008..21586543NAC-domain containing protein 90, putative, expressed
LOC_Os05g37090OsAffx.27201.1.S1_at11/115+21592507..21593007hypothetical protein
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os05g37130Os.53494.1.S1_x_at11/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.17542.1.S1_at8/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.9217.1.S1_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37130Os.24051.1.S1_x_at1/115+21616144..21620373Glycosyl hydrolases family 17 protein, expressed
LOC_Os05g37140Os.321.1.S1_at11/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37140OsAffx.27204.1.S1_x_at8/115+21622526..21624025Ferredoxin-6, chloroplast precursor, putative, expressed
LOC_Os05g37150Os.5264.1.S1_at11/115+21625298..21628492expressed protein
LOC_Os05g37150OsAffx.27204.1.S1_x_at2/115+21625298..21628492expressed protein
LOC_Os05g37160Os.17765.1.A1_at10/115+21628738..21632462Cell division protein ftsZ, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27202.1.S1_at--1132--2071Chr05:21604819..21604843 (25 bp)
ACATTCTGGTTGACGTGTGTGCCAT
LOC_Os05g37100
OsAffx.27202.1.S1_at--355--2791Chr05:21604696..21604720 (25 bp)
AAGAGGCTACCATCAATCCAGCTCA
LOC_Os05g37100
OsAffx.27202.1.S1_at--1014--2791Chr05:21604642..21604666 (25 bp)
AAGATGACAAAATTCCTGCTGCTGA
LOC_Os05g37100
OsAffx.27202.1.S1_at--302--9011Chr05:21604620..21604644 (25 bp)
TGAATTGCAAACCTCGGCCCTGGTA
LOC_Os05g37100
OsAffx.27202.1.S1_at--1150--4531Chr05:21604604..21604628 (25 bp)
GCCCTGGTAGCCCAAGACCTTGAAA
LOC_Os05g37100
OsAffx.27202.1.S1_at--562--931Chr05:21604561..21604585 (25 bp)
AGGAAGCTGTTCGAACCGACCAAGT
LOC_Os05g37100
OsAffx.27202.1.S1_at--704--711Chr05:21604525..21604549 (25 bp)
ATGATGAAGCACATTCTCCTCCTTT
LOC_Os05g37100
OsAffx.27202.1.S1_at--296--811Chr05:21604418..21604442 (25 bp)
ATGGGTTTGCCCAATTTCTCCGACT
LOC_Os05g37100
OsAffx.27202.1.S1_at--437--4331Chr05:21604380..21604404 (25 bp)
CCATCTTGGCTCGAACTTTTGCATA
LOC_Os05g37100
OsAffx.27202.1.S1_at--17--5331Chr05:21604347..21604371 (25 bp)
GAAGTACCATTGTCGTGACCCAAGG
LOC_Os05g37100
OsAffx.27202.1.S1_at--795--1817Chr07:12994161..12994187 (25 bp)
ACCCTTTTCGCCTATCCTGAGAAAT
NONE
Target Sequence 
ACATTCTGGTTGACGTGTGTGCCATAAACGTCACTCCTCTTCGAGCTGATGCTAGCCTTGTTGTTCCTGCTAGCACCGTC
GCCCCTTTGGATGTGCTTGCGTCGGCTGCGACAGTGATTGAAAAAGAGGCTACCATCAATCCAGCTCAAACAACTGATTC
AAGTGATTTTGTCCATGAAGATGACAAAATTCCTGCTGCTGAATTGCAAACCTCGGCCCTGGTAGCCCAAGACCTTGAAA
CTACGAGAAAGGTTGTCGAGGAAGCTGTTCGAACCGACCAAGTGGGAGAAAAAGATGATGAAGCACATTCTCCTCCTTTT
CTGTCAACTCCTTCGCCCCAACTAATTCAAGATGTTCTCGGTGGATTTAGCGAGCGGTGCGCTAAAAATGGTCGATGGCT
AATGGGTTTGCCCAATTTCTCCGACTTGGGAGAAAGTAGCCATCTTGGCTCGAACTTTTGCATAAACGACTTGAAGTACC
ATTGTCGTGACCCAAGGTCATGGACAAGATTGGGGATAGACGGGAAAACACCCTTTTCGCCTATCCTGAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis