Browse Element(s) Details


Os.51783.1.S1_at

Description gb:AK063703.1
DB_XREF= gi:32973721
TID=Os.51783.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G11, full insert sequence.
FL= gb:AK063703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3708011/11NAC-domain containing protein 90, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37040OsAffx.14989.1.S1_at11/115+21563735..21564517Myb-like DNA-binding domain containing protein
LOC_Os05g37050OsAffx.14990.1.S1_at11/115+21567068..21567863Myb-like DNA-binding domain containing protein
LOC_Os05g37060Os.54934.1.S1_at11/115+21570998..21572195Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g37070OsAffx.19542.3.S1_x_at6/115+21578164..21582386retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g37080Os.51783.1.S1_at11/115+21585008..21586543NAC-domain containing protein 90, putative, expressed
LOC_Os05g37090OsAffx.27201.1.S1_at11/115+21592507..21593007hypothetical protein
LOC_Os05g37100OsAffx.27202.1.S1_at11/115+21604260..21606305hypothetical protein
LOC_Os05g37110NANA5+21608394..21608801hypothetical protein
LOC_Os05g37120Os.15248.1.S1_at11/115+21609316..21614639Sec23/Sec24 trunk domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51783.1.S1_at--709--4771Chr05:21585842..21585866 (25 bp)
GCTGCTCCGGCACAGAACCATTATC
LOC_Os05g37080
Os.51783.1.S1_at--174--991Chr05:21585545..21585569 (25 bp)
AGGAGTGACTTCAGCTTGTGCCGGC
LOC_Os05g37080
Os.51783.1.S1_at--731--10811Chr05:21585530..21585554 (25 bp)
TTGTGCCGGCTGTACACCAGGTCAG
LOC_Os05g37080
Os.51783.1.S1_at--150--4151Chr05:21585420..21585444 (25 bp)
CGCGGCTGCGTTTGCCAACGAGGAT
LOC_Os05g37080
Os.51783.1.S1_at--549--3831Chr05:21585394..21585418 (25 bp)
CTGCTGAATCCTCCGGGAAGAGTCA
LOC_Os05g37080
Os.51783.1.S1_at--1109--5871Chr05:21585357..21585381 (25 bp)
GAGCGCGCCAGATGACAGCCTTGAC
LOC_Os05g37080
Os.51783.1.S1_at--467--2231Chr05:21585313..21585337 (25 bp)
ACAATGGCGGCTGCGATGGCTCTAT
LOC_Os05g37080
Os.51783.1.S1_at--77--3411Chr05:21585234..21585258 (25 bp)
CAGCATGACGGACTGGGCAGATCTT
LOC_Os05g37080
Os.51783.1.S1_at--828--5511Chr05:21585157..21585181 (25 bp)
GAAAACGGCGGTCGATCTCTAATTT
LOC_Os05g37080
Os.51783.1.S1_at--257--7811Chr05:21585148..21585172 (25 bp)
GGTCGATCTCTAATTTTTGTTGCTA
LOC_Os05g37080
Os.51783.1.S1_at--102--1291Chr05:21585059..21585083 (25 bp)
AGATCTCAGACAGTTGGCAGCTCAA
LOC_Os05g37080
Target Sequence 
GCTGCTCCGGCACAGAACCATTATCTCCAGACGAGGAGTGACTTCAGCTTGTGCCGGCTGTACACCAGGTCAGGGTGCCC
CCGGCAGTTCGATCGCCGGCCGCCGAGCTCCTCGGTGGCAGGCGGCGGCGGCGAGAACCGGGCGGCGCCGTCATCCACCG
CGGCTGCGTTTGCCAACGAGGATGCTGCTGAATCCTCCGGGAAGAGTCAGAAGAGGAAAAGGAGCGCGCCAGATGACAGC
CTTGACAGCACCTCATCCAGCGACGACAATGGCGGCTGCGATGGCTCTATGCTGCAGCAACAGCAGCAGAGGCAGAGAGG
AACCGATGAGGAGCTTGTAGAGTGCAGCATGACGGACTGGGCAGATCTTTTGGACTGGTTTTGATGTAGGAATTCGATTT
TACGGTCGGTCGTAAATTCAAGAAAACGGCGGTCGATCTCTAATTTTTGTTGCTAATTTTCATTATTTTTTTCGTGTTGC
CAAAAAATATTTTAGCAGTCAAATGGTAAATTTTGAGAAAGATCTCAGACAGTTGGCAGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis