Browse Element(s) Details


Os.54934.1.S1_at

Description gb:AK107134.1
DB_XREF= gi:32992343
TID=Os.54934.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C08, full insert sequence.
FL= gb:AK107134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3706011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37010OsAffx.4542.1.S1_at11/115+21547214..21547694hypothetical protein
LOC_Os05g37020OsAffx.27200.1.S1_at10/115+21551206..21552644hypothetical protein
LOC_Os05g37020OsAffx.15850.1.S1_at1/115+21551206..21552644hypothetical protein
LOC_Os05g37030NANA5+21558049..21558447expressed protein
LOC_Os05g37040OsAffx.14989.1.S1_at11/115+21563735..21564517Myb-like DNA-binding domain containing protein
LOC_Os05g37050OsAffx.14990.1.S1_at11/115+21567068..21567863Myb-like DNA-binding domain containing protein
LOC_Os05g37060Os.54934.1.S1_at11/115+21570998..21572195Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g37070OsAffx.19542.3.S1_x_at6/115+21578164..21582386retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g37080Os.51783.1.S1_at11/115+21585008..21586543NAC-domain containing protein 90, putative, expressed
LOC_Os05g37090OsAffx.27201.1.S1_at11/115+21592507..21593007hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54934.1.S1_at--720--3751Chr05:21571825..21571849 (25 bp)
CTCATCGAGCGTGGCATGGTTGCGT
LOC_Os05g37060
Os.54934.1.S1_at--153--3991Chr05:21571797..21571821 (25 bp)
CGGGCTGCTGGGACGACGACAACAA
LOC_Os05g37060
Os.54934.1.S1_at--567--5111Chr05:21571435..21571455 (21 bp)
GCACAGGCTATTTCTTGAAGGGCTA
LOC_Os05g37060
Os.54934.1.S1_at--26--1651Chr05:21571293..21571317 (25 bp)
AGCCGTGGCGACTCCAAGCGTAAGA
LOC_Os05g37060
Os.54934.1.S1_at--313--1991Chr05:21571254..21571278 (25 bp)
ACTGCCCCATGATGTGTGGTCCGAT
LOC_Os05g37060
Os.54934.1.S1_at--616--251Chr05:21571224..21571248 (25 bp)
ATATGCATTATGATCCGGTCCAGTC
LOC_Os05g37060
Os.54934.1.S1_at--558--6311Chr05:21571213..21571237 (25 bp)
GATCCGGTCCAGTCTAGGTTTAGTT
LOC_Os05g37060
Os.54934.1.S1_at--504--10291Chr05:21571185..21571209 (25 bp)
TTTCCATCAATTCCAACTAGCTTTC
LOC_Os05g37060
Os.54934.1.S1_at--1008--2011Chr05:21571170..21571194 (25 bp)
ACTAGCTTTCAACCCCATTTCAAAG
LOC_Os05g37060
Os.54934.1.S1_at--444--10451Chr05:21571106..21571130 (25 bp)
TTAGTTCCTCTCTCTGTGTTGTGTA
LOC_Os05g37060
Os.54934.1.S1_at--35--2711Chr05:21571054..21571078 (25 bp)
AAGCTTGGCTGGAACCTGAGATCAA
LOC_Os05g37060
Target Sequence 
CTCATCGAGCGTGGCATGGTTGCGTCCCCGGGCTGCTGGGACGACGACAACAACAGCGCCGGCCACGGCCGTGGCAGTGG
TGGGGATGAGCGTCGTCGCGGCGTGCCCTGGACTGAGGAGGAGCACAGGCTATTTCTTGAAGGGCTAGAGAAATATGGGN
CGTGGCGACTGGCGCAACATCTCGCGCTGGTCGGTGAAGACGCGGACTCCGACGCAAGTGGCGAGCCATGCGCAGAAGTT
CTTCATCCGACAGGCCAACGCCAGCAGCCGTGGCGACTCCAAGCGTAAGAGCATCCACGACATCACTGCCCCATGATGTG
TGGTCCGATCGAGGATATGCATTATGATCCGGTCCAGTCTAGGTTTAGTTGTATTTCCATCAATTCCAACTAGCTTTCAA
CCCCATTTCAAAGAGGAGAGAACGAAGGGAGTTTAGTCGTCGGCCCTCCCTGTTAGTTCCTCTCTCTGTGTTGTGTAAAA
TATAGCTAGGCAATAGCTAAAACTAAGCTTGGCTGGAACCTGAGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis