Browse Element(s) Details


OsAffx.15850.1.S1_at

Description tigr:9634.m03822
TID=OsAffx.15850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3989011/11hypothetical protein
LOC_Os02g343801/11retrotransposon protein, putative, LINE subclass
LOC_Os05g370201/11hypothetical protein
LOC_Os09g169601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39870Os.5316.1.S1_at10/116+23684182..2368726326S protease regulatory subunit 8, putative, expressed
LOC_Os06g39880Os.6960.1.S1_at11/116+23703718..23706251cytochrome P450, putative, expressed
LOC_Os06g39890OsAffx.15850.1.S1_at11/116+23706545..23708083hypothetical protein
LOC_Os06g39890OsAffx.29628.1.S1_at1/116+23706545..23708083hypothetical protein
LOC_Os06g39900Os.15722.1.S1_s_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900Os.52129.1.S1_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900OsAffx.28016.1.S1_at2/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39906Os.26397.1.S1_at11/116+23731558..23733539Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15850.1.S1_at--890--1811Chr06:23707524..23707548 (25 bp)
ACCCAAGAGTTGTTGCTAGGCCAGA
LOC_Os06g39890
OsAffx.15850.1.S1_at--897--4071Chr06:23707430..23707454 (25 bp)
CGAGCGGCCGTCGATCCGTTGGTCA
LOC_Os06g39890
OsAffx.15850.1.S1_at--304--5711Chr06:23707390..23707414 (25 bp)
GACTCACCATTTCCCAGCAAAAAGA
LOC_Os06g39890
OsAffx.15850.1.S1_at--474--2952Chr09:10368991..10369258 (25 bp)
AAGGCGCGACACTTCTTGTAAAAGG
LOC_Os09g16960
OsAffx.15850.1.S1_at--633--5291Chr06:23706816..23707058 (25 bp)
GAATGGCCAGCCAGAGTCCTGGACG
LOC_Os06g39890
OsAffx.15850.1.S1_at--139--9271Chr06:23706800..23706823 (24 bp)
TCCTGGACGCGGCACCAAAAACATA
LOC_Os06g39890
OsAffx.15850.1.S1_at--640--5231Chr06:23706773..23706797 (25 bp)
GAATACCCTGGATGAACTCGAGATC
LOC_Os06g39890
OsAffx.15850.1.S1_at--668--5853Chr02:20567800..20567820 (21 bp)
GACCAGATCATCAGCATAGAGGGAG
LOC_Os02g34380
OsAffx.15850.1.S1_at--845--4671Chr06:23706697..23706721 (25 bp)
GCGGTGTTGCAAGGCCCGATCATTA
LOC_Os06g39890
OsAffx.15850.1.S1_at--418--9351Chr06:23706632..23706656 (25 bp)
TCGCATTGAGTACATCCATAACCAG
LOC_Os06g39890
OsAffx.15850.1.S1_at--602--1331Chr06:23706588..23706612 (25 bp)
AGAGGATCCCCTTATCTCGGAAAGT
LOC_Os06g39890
Target Sequence 
ACCCAAGAGTTGTTGCTAGGCCAGAAGCAACTGTGCGCGAACCTCGGAGACACTGGGGAACGACGAAGAGGAGATCTAGA
GCCAAGGACGCCACCGAGCGGCCGTCGATCCGTTGGTCAGACCAGAAGAGCATAGACTCACCATTTCCCAGCAAAAAGAA
GGTGGATGCCATGAACATGTCGGAGACGGAAGGCGCGACACTTCTTGTAAAAGGCCTTAATAACCCAGACTGGAAGGCCG
ATCGCCATAGATACATGGACCGGAATGGAGGAGAGAACTGTCTGGACCAGCACAGAATGGCCAGCCAGAGTCCTGGACGC
GGCACCAAAAACATAAAGAATACCCTGGATGAACTCGAGATCCTGATGAATCGGGGAGAAGAAGAGGACCAGATCATCAG
CATAGAGGGAGGCGCGGTGTTGCAAGGCCCGATCATTAAGCGGAAGGAAACCACCGGAGTCGGAGGCGTGGCGGAGCATC
GCATTGAGTACATCCATAACCAGAATGAAGAGCATGGGAGAGAGAGGATCCCCTTATCTCGGAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis