Browse Element(s) Details


Os.5316.1.S1_at

Description gb:AK065619.1
DB_XREF= gi:32975637
TID=Os.5316.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034M24, full insert sequence.
FL= gb:AK065619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3987010/1126S protease regulatory subunit 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39820OsAffx.28013.1.S1_at11/116+23655251..23659992retrotransposon protein, putative, unclassified, expressed
LOC_Os06g39830OsAffx.15848.1.S1_at11/116+23661021..23661751hypothetical protein
LOC_Os06g39840NANA6+23662171..23667724retrotransposon protein, putative, unclassified
LOC_Os06g39850NANA6+23669091..23669847hypothetical protein
LOC_Os06g39860OsAffx.28014.1.S1_at11/116+23673240..23673617hypothetical protein
LOC_Os06g39870Os.5316.1.S1_at10/116+23684182..2368726326S protease regulatory subunit 8, putative, expressed
LOC_Os06g39880Os.6960.1.S1_at11/116+23703718..23706251cytochrome P450, putative, expressed
LOC_Os06g39890OsAffx.15850.1.S1_at11/116+23706545..23708083hypothetical protein
LOC_Os06g39890OsAffx.29628.1.S1_at1/116+23706545..23708083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5316.1.S1_at--180--1431Chr06:23686858..23686882 (25 bp)
AGAAGGATACCGAAAAGAACATGTC
LOC_Os06g39870
Os.5316.1.S1_at--823--7351Chr06:23686901..23686925 (25 bp)
GTGAAGGAAGCTCTCATCTCGACAT
LOC_Os06g39870
Os.5316.1.S1_at--125--5411Chr06:23686907..23686931 (25 bp)
GAAGCTCTCATCTCGACATCCCTGT
LOC_Os06g39870
Os.5316.1.S1_at--6--5671Chr06:23686921..23686945 (25 bp)
GACATCCCTGTCATATGCCTAAACA
LOC_Os06g39870
Os.5316.1.S1_at--1062--3571Chr06:23686932..23686956 (25 bp)
CATATGCCTAAACAGCTGAAGCTAA
LOC_Os06g39870
Os.5316.1.S1_at--569--3851Chr06:23686947..23686969 (23 bp)
CTGAAGCTAAACAGCGCCAGCGAGT
LOC_Os06g39870
Os.5316.1.S1_at--282--3391NONE
CAGCGCCAGCGAGTGCATTGATCGC
NONE
Os.5316.1.S1_at--1084--4931Chr06:23686971..23686995 (25 bp)
GCATTGATCGCTGTAAATTCCTTAA
LOC_Os06g39870
Os.5316.1.S1_at--635--7031Chr06:23686983..23687007 (25 bp)
GTAAATTCCTTAAAACATGTCGAGA
LOC_Os06g39870
Os.5316.1.S1_at--1100--2551Chr06:23687013..23687037 (25 bp)
AACGTTCAACATCTTACAGTAGCTT
LOC_Os06g39870
Os.5316.1.S1_at--994--9691Chr06:23687018..23687042 (25 bp)
TCAACATCTTACAGTAGCTTCTTTT
LOC_Os06g39870
Target Sequence 
AGAAGGATACCGAAAAGAACATGTCCCTGCGCAAGCTCTGGAAGTGAAGGAAGCTCTCATCTCGACATCCCTGTCATATG
CCTAAACAGCTGAAGCTAAACAGCGCCAGCGAGTGCATTGATCGCTGTAAATTCCTTAAAACATGTCGAGAAGGGAAACG
TTCAACATCTTACAGTAGCTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis