Browse Element(s) Details


OsAffx.28013.1.S1_at

Description tigr:9634.m03813
TID=OsAffx.28013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3982011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os06g374001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39780Os.26811.1.A1_at11/116+23631475..23633192Cytochrome P450 family protein, expressed
LOC_Os06g39790OsAffx.23796.1.S1_at1/116+23638497..23642513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39800OsAffx.28012.1.S1_at11/116+23648636..23648980hypothetical protein
LOC_Os06g39810OsAffx.5064.1.S1_at11/116+23652854..23653306hypothetical protein
LOC_Os06g39820OsAffx.28013.1.S1_at11/116+23655251..23659992retrotransposon protein, putative, unclassified, expressed
LOC_Os06g39830OsAffx.15848.1.S1_at11/116+23661021..23661751hypothetical protein
LOC_Os06g39840NANA6+23662171..23667724retrotransposon protein, putative, unclassified
LOC_Os06g39850NANA6+23669091..23669847hypothetical protein
LOC_Os06g39860OsAffx.28014.1.S1_at11/116+23673240..23673617hypothetical protein
LOC_Os06g39870Os.5316.1.S1_at10/116+23684182..2368726326S protease regulatory subunit 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28013.1.S1_at--381--4331Chr06:23656526..23656550 (25 bp)
CCATGCTTCATGAGGCGGCGGTGAA
LOC_Os06g39820
OsAffx.28013.1.S1_at--1037--4671Chr06:23656543..23656567 (25 bp)
GCGGTGAATCACTCTATGTACTCTC
LOC_Os06g39820
OsAffx.28013.1.S1_at--864--731Chr06:23656558..23656582 (25 bp)
ATGTACTCTCCGGATACAAACTCTC
LOC_Os06g39820
OsAffx.28013.1.S1_at--784--6831Chr06:23656588..23656612 (25 bp)
GTTTCCTTCCCTGTTTTTGTGACAT
LOC_Os06g39820
OsAffx.28013.1.S1_at--1107--2091Chr06:23656609..23656633 (25 bp)
ACATCCTTTGCAAGACCGGCATCGG
LOC_Os06g39820
OsAffx.28013.1.S1_at--587--2991Chr06:23656690..23656714 (25 bp)
AATGACATCGCAACGTCGATCCAGC
LOC_Os06g39820
OsAffx.28013.1.S1_at--640--3791Chr06:23656723..23656747 (25 bp)
CTCCCAGCTCCGGATGTGAATGTGA
LOC_Os06g39820
OsAffx.28013.1.S1_at--3--8872Chr06:23656745..23656769 (25 bp)
TGAGGAAGCCTTCCCGCGTTAAGGT
LOC_Os06g39820
OsAffx.28013.1.S1_at--180--1051Chr06:23656766..23656790 (25 bp)
AGGTGAAAATCCCTGTCATCGCCTC
LOC_Os06g39820
OsAffx.28013.1.S1_at--1058--1631Chr06:23656796..23656820 (25 bp)
AGCGTCACAGTGAACGGCTGCTCTA
LOC_Os06g39820
OsAffx.28013.1.S1_at--905--5271Chr06:23656890..23656914 (25 bp)
GAATGATTCTGCTTCTTTCGATGAT
LOC_Os06g39820
Target Sequence 
CCATGCTTCATGAGGCGGCGGTGAATCACTCTATGTACTCTCCGGATACAAACTCTCCTCGTGTTTCCTTCCCTGTTTTT
GTGACATCCTTTGCAAGACCGGCATCGGCTCCAACTCTGACACCTCTGGCTGCAGCAAAGGATTCACAGATCACTGAGTT
CATCAATGACATCGCAACGTCGATCCAGCCACCTCTTCTCCCAGCTCCGGATGTGAATGTGAGGAAGCCTTCCCGCGTTA
AGGTGAAAATCCCTGTCATCGCCTCTGCTCAGCGTCACAGTGAACGGCTGCTCTATAAACGACGTGCAAATGCAAAATTT
GAAAATTTCACCCAAGAAATTCTTTCAAAAAAGTTCGGTATCATGAATGATTCTGCTTCTTTCGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis