Browse Element(s) Details


OsAffx.23796.1.S1_at

Description gb:NM_191272.1
DB_XREF= gi:34909627
GEN=P0503C12.13
TID=OsAffx.23796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0503C12.13 (P0503C12.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g397901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39760Os.15810.2.S1_x_at11/116+23612191..23620156Serine-threonine kinase receptor-associated protein, putative, expressed
LOC_Os06g39770NANA6+23621875..23623844hypothetical protein
LOC_Os06g39780Os.26811.1.A1_at11/116+23631475..23633192Cytochrome P450 family protein, expressed
LOC_Os06g39790OsAffx.23796.1.S1_at1/116+23638497..23642513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39800OsAffx.28012.1.S1_at11/116+23648636..23648980hypothetical protein
LOC_Os06g39810OsAffx.5064.1.S1_at11/116+23652854..23653306hypothetical protein
LOC_Os06g39820OsAffx.28013.1.S1_at11/116+23655251..23659992retrotransposon protein, putative, unclassified, expressed
LOC_Os06g39830OsAffx.15848.1.S1_at11/116+23661021..23661751hypothetical protein
LOC_Os06g39840NANA6+23662171..23667724retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23796.1.S1_at--480--571Chr01:31987319..31987343 (25 bp)
ATCCAGGTAATTTGGCGCCGTACGT
NONE
OsAffx.23796.1.S1_at--713--9931Chr01:31987299..31987323 (25 bp)
TACGTGCTGGCGGTACTGCATTCGG
NONE
OsAffx.23796.1.S1_at--1160--9051Chr01:31987283..31987307 (25 bp)
TGCATTCGGCGCATAGCCAGTTCAG
NONE
OsAffx.23796.1.S1_at--430--1691Chr01:31987269..31987293 (25 bp)
AGCCAGTTCAGCTACACTACTAGTC
NONE
OsAffx.23796.1.S1_at--768--9851Chr01:31987257..31987281 (25 bp)
TACACTACTAGTCTTGTCCTTGGCT
NONE
OsAffx.23796.1.S1_at--388--10811Chr01:31987244..31987268 (25 bp)
TTGTCCTTGGCTTTGATTCTACTCA
NONE
OsAffx.23796.1.S1_at--114--3751NONE
CTCAATGTTTACTTTGCGTCTGCAT
NONE
OsAffx.23796.1.S1_at--1111--3712Chr06:23640849..23640871 (22 bp)
CTACCAGCAAAACGGCTCGCAGAAG
LOC_Os06g39790
OsAffx.23796.1.S1_at--640--5031Chr01:31985320..31985344 (25 bp)
GCAGAAGGCCATGACGCGGGCCATT
NONE
OsAffx.23796.1.S1_at--268--5811Chr01:31985308..31985332 (25 bp)
GACGCGGGCCATTGTTACGGCCTAA
NONE
OsAffx.23796.1.S1_at--741--31Chr01:31985298..31985322 (25 bp)
ATTGTTACGGCCTAATGGTTGTGGG
NONE
Target Sequence 
ATCCAGGTAATTTGGCGCCGTACGTGCTGGCGGTACTGCATTCGGCGCATAGCCAGTTCAGCTACACTACTAGTCTTGTC
CTTGGCTTTGATTCTACTCAATGTTTACTTTGCGTCTGCATTGTGCTCTGCCTGGTCTTGGTGGTCGTCGTGGGGCTCGC
GGCCACGCAGGCCGAGGCGGCCCGTGCCTTGGCAGAGTACGCCGCTCCGCCGGGCGGCGACTACGACGACGACGTGGCTG
GCGGCGGCGGCGGCGGCGGATTTGGTATCCGTGGACGTCGTCGGCCGGGGAGCCTACCAGCAAAACGGCTCGCAGAAGGC
CATGACGCGGGCCATTGTTACGGCCTAATGGTTGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis