Browse Element(s) Details


Os.52129.1.S1_at

Description gb:AK064997.1
DB_XREF= gi:32975015
TID=Os.52129.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001D22, full insert sequence.
FL= gb:AK064997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3990011/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39880Os.6960.1.S1_at11/116+23703718..23706251cytochrome P450, putative, expressed
LOC_Os06g39890OsAffx.15850.1.S1_at11/116+23706545..23708083hypothetical protein
LOC_Os06g39890OsAffx.29628.1.S1_at1/116+23706545..23708083hypothetical protein
LOC_Os06g39900Os.15722.1.S1_s_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900Os.52129.1.S1_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900OsAffx.28016.1.S1_at2/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39906Os.26397.1.S1_at11/116+23731558..23733539Homeobox domain containing protein, expressed
LOC_Os06g39912Os.37009.1.S1_at11/116+23735838..23736879expressed protein
LOC_Os06g39912OsAffx.5065.1.S1_x_at8/116+23735838..23736879expressed protein
LOC_Os06g39920NANA6+23742165..23746361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52129.1.S1_at--798--6451Chr06:23721233..23721257 (25 bp)
GATCAAAGTACGAGACACGCACTGA
LOC_Os06g39900
Os.52129.1.S1_at--965--2931Chr06:23721206..23721230 (25 bp)
AAGGCTAGAGAGTTCTTGGCCGTCT
LOC_Os06g39900
Os.52129.1.S1_at--4--7151Chr06:23721185..23721209 (25 bp)
GTCTTCTGTTCTGTGATTGTGGCAT
LOC_Os06g39900
Os.52129.1.S1_at--955--10831Chr06:23721169..23721193 (25 bp)
TTGTGGCATCTTGCATGCAGCTGGT
LOC_Os06g39900
Os.52129.1.S1_at--900--4711Chr06:23721150..23721174 (25 bp)
GCTGGTATACTTTGATGGCTCCTAG
LOC_Os06g39900
Os.52129.1.S1_at--323--8491Chr06:23721135..23721159 (25 bp)
TGGCTCCTAGCTGCAATTCTTTAAG
LOC_Os06g39900
Os.52129.1.S1_at--813--6671Chr06:23721055..23721079 (25 bp)
GTTGCTAGATCTGCATTGCTACGAA
LOC_Os06g39900
Os.52129.1.S1_at--802--3111Chr06:23721029..23721053 (25 bp)
AATTTGTTCAGGTTGCACGCATTTG
LOC_Os06g39900
Os.52129.1.S1_at--222--8911Chr06:23720944..23720968 (25 bp)
TGAGAAACCTCCGTTGAAGCCAACT
LOC_Os06g39900
Os.52129.1.S1_at--599--8171Chr06:23720902..23720926 (25 bp)
GGAACATGTCCTTTGTCTCATTAGT
LOC_Os06g39900
Os.52129.1.S1_at--148--2631Chr06:23720869..23720893 (25 bp)
AACCGATGGTGATGCATTCCTTTTA
LOC_Os06g39900
Target Sequence 
GATCAAAGTACGAGACACGCACTGAAAAAGGCTAGAGAGTTCTTGGCCGTCTTCTGTTCTGTGATTGTGGCATCTTGCAT
GCAGCTGGTATACTTTGATGGCTCCTAGCTGCAATTCTTTAAGTTGTAGTACAGTGTAATATGCCATTACTTGTTCCGGA
TGTACTGAAAGATGTAAAGTTGCTAGATCTGCATTGCTACGAATAATTTGTTCAGGTTGCACGCATTTGACAAGTTCCCT
TTTCAGAAGAAGCATTATATGGTGCACCTGGTGTTTTCAGATGAGCAAGTGAGAAACCTCCGTTGAAGCCAACTGCAAGC
AAAGAATATATGGAACATGTCCTTTGTCTCATTAGTTTGTATTAAACCGATGGTGATGCATTCCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis