Browse Element(s) Details


Os.37009.1.S1_at

Description gb:AK059761.1
DB_XREF= gi:32969779
TID=Os.37009.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.37009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F06, full insert sequence.
FL= gb:AK059761.1 gb:AK061378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3991211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39900Os.15722.1.S1_s_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900Os.52129.1.S1_at11/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39900OsAffx.28016.1.S1_at2/116+23720780..23725850Agenet domain containing protein, expressed
LOC_Os06g39906Os.26397.1.S1_at11/116+23731558..23733539Homeobox domain containing protein, expressed
LOC_Os06g39912Os.37009.1.S1_at11/116+23735838..23736879expressed protein
LOC_Os06g39912OsAffx.5065.1.S1_x_at8/116+23735838..23736879expressed protein
LOC_Os06g39920NANA6+23742165..23746361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g39930NANA6+23747418..23753573retrotransposon protein, putative, unclassified
LOC_Os06g39940NANA6+23753901..23757420transposon protein, putative, unclassified
LOC_Os06g39950NANA6+23759287..23763196retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37009.1.S1_at--535--2631Chr06:23736445..23736469 (25 bp)
AACCATACATACCTTCCCGGTGGTG
LOC_Os06g39912
Os.37009.1.S1_at--570--9471Chr06:23736478..23736502 (25 bp)
TCTGTTACTGTAAAGCCGTGTGAGC
LOC_Os06g39912
Os.37009.1.S1_at--883--7591Chr06:23736513..23736537 (25 bp)
GGGCATGTCTATACACTCGAGTGAC
LOC_Os06g39912
Os.37009.1.S1_at--132--9531Chr06:23736607..23736631 (25 bp)
TCTCTTTTGTTCATCAGCTCCTCGA
LOC_Os06g39912
Os.37009.1.S1_at--1136--10431Chr06:23736671..23736695 (25 bp)
TTAGTACTAGCAACCAGCAGCTATT
LOC_Os06g39912
Os.37009.1.S1_at--65--6051Chr06:23736696..23736720 (25 bp)
GAGATTTGGGTTGTTCTTCAGTTCT
LOC_Os06g39912
Os.37009.1.S1_at--1141--7171Chr06:23736723..23736747 (25 bp)
GTCTGGTACAATTCTTCTCTCATTT
LOC_Os06g39912
Os.37009.1.S1_at--433--10511Chr06:23736749..23736773 (25 bp)
TTCAGCTGCTGAGTGAGCCTTTGGA
LOC_Os06g39912
Os.37009.1.S1_at--415--5871Chr06:23736763..23736787 (25 bp)
GAGCCTTTGGATCTCTGTGATTGAT
LOC_Os06g39912
Os.37009.1.S1_at--572--6591Chr06:23736793..23736817 (25 bp)
GATTGCGTTGCATGTGAGTGAGCTT
LOC_Os06g39912
Os.37009.1.S1_at--945--8671Chr06:23736827..23736851 (25 bp)
TGTGTTGTCGCCTGTGTGGAGCAAA
LOC_Os06g39912
Target Sequence 
AACCATACATACCTTCCCGGTGGTGCTGCATCATCTGTTACTGTAAAGCCGTGTGAGCCATGGATCTGGGGCATGTCTAT
ACACTCGAGTGACACATGAGTTTGTACTGCTTATAAACACATATATATTTGTCAGGTTAGTTTTTTTTTTCTTTTTTTTA
CCTTCTCTTTTGTTCATCAGCTCCTCGATCCAGATCCATGGCTCAAACCCATAGTTATTAGAGCTTATTAGTACTAGCAA
CCAGCAGCTATTGAGATTTGGGTTGTTCTTCAGTTCTTTGTCTGGTACAATTCTTCTCTCATTTCTTCAGCTGCTGAGTG
AGCCTTTGGATCTCTGTGATTGATCGATTGATTGCGTTGCATGTGAGTGAGCTTGAGGTGTGCTGTGTTGTCGCCTGTGT
GGAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis