Browse Element(s) Details


OsAffx.14989.1.S1_at

Description tigr:9633.m03415
TID=OsAffx.14989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3704011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37000NANA5+21540718..21542173hypothetical protein
LOC_Os05g37010OsAffx.4542.1.S1_at11/115+21547214..21547694hypothetical protein
LOC_Os05g37020OsAffx.27200.1.S1_at10/115+21551206..21552644hypothetical protein
LOC_Os05g37020OsAffx.15850.1.S1_at1/115+21551206..21552644hypothetical protein
LOC_Os05g37030NANA5+21558049..21558447expressed protein
LOC_Os05g37040OsAffx.14989.1.S1_at11/115+21563735..21564517Myb-like DNA-binding domain containing protein
LOC_Os05g37050OsAffx.14990.1.S1_at11/115+21567068..21567863Myb-like DNA-binding domain containing protein
LOC_Os05g37060Os.54934.1.S1_at11/115+21570998..21572195Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g37070OsAffx.19542.3.S1_x_at6/115+21578164..21582386retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g37080Os.51783.1.S1_at11/115+21585008..21586543NAC-domain containing protein 90, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14989.1.S1_at--772--8251Chr05:21564452..21564476 (25 bp)
GGCACCGCCAGTTCCGAGCAGCAGG
LOC_Os05g37040
OsAffx.14989.1.S1_at--925--7411Chr05:21564403..21564427 (25 bp)
GTGTTCGAGAGTGCACTCGTGGCAT
LOC_Os05g37040
OsAffx.14989.1.S1_at--542--5111Chr05:21564391..21564415 (25 bp)
GCACTCGTGGCATTCTCGGAGCACA
LOC_Os05g37040
OsAffx.14989.1.S1_at--524--2211Chr05:21564363..21564387 (25 bp)
ACAACCGGTGGGTGCTTGTGGCTTC
LOC_Os05g37040
OsAffx.14989.1.S1_at--978--10831Chr05:21564348..21564372 (25 bp)
TTGTGGCTTCGCGACTCCCAGGGCG
LOC_Os05g37040
OsAffx.14989.1.S1_at--275--4351Chr05:21564331..21564355 (25 bp)
CCAGGGCGCCTAGCGCAAGATGTTT
LOC_Os05g37040
OsAffx.14989.1.S1_at--390--4591Chr05:21564319..21564343 (25 bp)
GCGCAAGATGTTTGGGAGCACTACC
LOC_Os05g37040
OsAffx.14989.1.S1_at--1156--5931Chr05:21564304..21564328 (25 bp)
GAGCACTACCAAGTACTCATGGACG
LOC_Os05g37040
OsAffx.14989.1.S1_at--468--7091Chr05:21564277..21564301 (25 bp)
GTCAACCTCATCGAGCATGGCATGA
LOC_Os05g37040
OsAffx.14989.1.S1_at--218--1511Chr05:21564264..21564288 (25 bp)
AGCATGGCATGATCGCGTCCCCGGG
LOC_Os05g37040
OsAffx.14989.1.S1_at--992--8594Chr04:816686..816707 (22 bp)
TGGTCGGTGAAGACATGAACGCCGC
NONE
Target Sequence 
GGCACCGCCAGTTCCGAGCAGCAGGCTATGGAGCAAGGTGGAGGACAAGGTGTTCGAGAGTGCACTCGTGGCATTCTCGG
AGCACACGCACAACCGGTGGGTGCTTGTGGCTTCGCGACTCCCAGGGCGCCTAGCGCAAGATGTTTGGGAGCACTACCAA
GTACTCATGGACGACGTCAACCTCATCGAGCATGGCATGATCGCGTCCCCGGGCTATTCCTGGAAAAAGGCTGGAGAAGT
ATGGACGTGGCGACTGGCGCAATATCTCACGCTGGTCGGTGAAGACATGAACGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis