Browse Element(s) Details


OsAffx.27200.1.S1_at

Description tigr:9633.m03413
TID=OsAffx.27200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3702010/11hypothetical protein
LOC_Os04g309701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36990Os.10101.1.S1_at11/115+21527207..21528419uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g37000NANA5+21540718..21542173hypothetical protein
LOC_Os05g37010OsAffx.4542.1.S1_at11/115+21547214..21547694hypothetical protein
LOC_Os05g37020OsAffx.27200.1.S1_at10/115+21551206..21552644hypothetical protein
LOC_Os05g37020OsAffx.15850.1.S1_at1/115+21551206..21552644hypothetical protein
LOC_Os05g37030NANA5+21558049..21558447expressed protein
LOC_Os05g37040OsAffx.14989.1.S1_at11/115+21563735..21564517Myb-like DNA-binding domain containing protein
LOC_Os05g37050OsAffx.14990.1.S1_at11/115+21567068..21567863Myb-like DNA-binding domain containing protein
LOC_Os05g37060Os.54934.1.S1_at11/115+21570998..21572195Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27200.1.S1_at--145--2871Chr05:21552500..21552524 (25 bp)
AAGGATGCCACTGAACGGCCGTCGA
LOC_Os05g37020
OsAffx.27200.1.S1_at--818--8973Chr08:16002896..16002916 (21 bp)
TGAACGGCCGTCGATCCATTGGTCA
NONE
OsAffx.27200.1.S1_at--111--8531Chr05:21552451..21552475 (25 bp)
TGGACTCACCATTTTCGGGCACGAA
LOC_Os05g37020
OsAffx.27200.1.S1_at--774--7512Chr05:21552422..21552446 (25 bp)
GTGGATGCCGCGAACATGTCGAAGA
LOC_Os05g37020
OsAffx.27200.1.S1_at--75--5231Chr05:21552092..21552116 (25 bp)
GAACGGCCCGCCAGAGTGGTAAGTC
LOC_Os05g37020
OsAffx.27200.1.S1_at--445--1334Chr10:20641064..20641088 (25 bp)
AGAGTGGTAAGTCGTCCCTTCCAAG
NONE
OsAffx.27200.1.S1_at--932--4912Chr09:19687706..19687725 (20 bp)
GCTTCCTTCGGCAACTTGCGAACGA
NONE
OsAffx.27200.1.S1_at--30--5511NONE
GAACAGCGGAATGCCGAGATTCTTA
NONE
OsAffx.27200.1.S1_at--348--4911Chr05:21551331..21551355 (25 bp)
GCTTGCAGGCGCAGGGTTGAACCCA
LOC_Os05g37020
OsAffx.27200.1.S1_at--17--1031Chr05:21551319..21551343 (25 bp)
AGGGTTGAACCCAGCCAGGTAGCAC
LOC_Os05g37020
OsAffx.27200.1.S1_at--941--1011Chr05:21551303..21551327 (25 bp)
AGGTAGCACTCGATCTGGCCGTCCG
LOC_Os05g37020
Target Sequence 
AAGGATGCCACTGAACGGCCGTCGATCCATTGGTCAGACCAGAAGAGCATGGACTCACCATTTTCGGGCACGAAGAAAGT
GGATGCCGCGAACATGTCGAAGACGGAAGGCGCGACTCTTCTTGTCAATGGCCTTAATAACCCAGACTGGAAGGCCAACC
GCCATAGATACATGGACTGGAATAGAGGAGAGAACCGACTGGACCAGCACAGAACGGCCCGCCAGAGTGGTAAGTCGTCC
CTTCCAAGGCGGAAGTCGATGGGAGACTTTATCCACGAGTGGCTGCAAGGCTTCCTTCGGCAACTTGCGAACGAACAGCG
GAATGCCGAGATTCTTAATTTGACAAGCAAAGGAAGCAGATATATGCAAGCTTGCAGGCGCAGGGTTGAACCCAGCCAGG
TAGCACTCGATCTGGCCGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis