Browse Element(s) Details


Os.10101.1.S1_at

Description gb:AK108756.1
DB_XREF= gi:32993965
TID=Os.10101.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-F12, full insert sequence.
FL= gb:AK108756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3699011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36960Os.53685.1.S1_at11/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36960Os.49478.1.S1_at1/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36970OsAffx.14987.1.S1_at11/115+21512670..21513839uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g36980OsAffx.14988.1.S1_x_at11/115+21515492..21520139hypothetical protein
LOC_Os05g36980OsAffx.14988.2.S1_x_at6/115+21515492..21520139hypothetical protein
LOC_Os05g36990Os.10101.1.S1_at11/115+21527207..21528419uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g37000NANA5+21540718..21542173hypothetical protein
LOC_Os05g37010OsAffx.4542.1.S1_at11/115+21547214..21547694hypothetical protein
LOC_Os05g37020OsAffx.27200.1.S1_at10/115+21551206..21552644hypothetical protein
LOC_Os05g37020OsAffx.15850.1.S1_at1/115+21551206..21552644hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10101.1.S1_at--1029--8431Chr05:21527468..21527492 (25 bp)
GGCCATATCTCTTTCAGGCTAAGGT
LOC_Os05g36990
Os.10101.1.S1_at--411--351Chr05:21527440..21527464 (25 bp)
ATAACTAAAGCTAGCCCCGAGACAA
LOC_Os05g36990
Os.10101.1.S1_at--479--5591Chr05:21527420..21527444 (25 bp)
GACAATGCGGGCTGGCTACCTACGT
LOC_Os05g36990
Os.10101.1.S1_at--260--8491Chr05:21527408..21527432 (25 bp)
TGGCTACCTACGTGTGTGTGTGCGC
LOC_Os05g36990
Os.10101.1.S1_at--224--7471Chr05:21527393..21527417 (25 bp)
GTGTGTGCGCGTGTTAATTAATTCC
LOC_Os05g36990
Os.10101.1.S1_at--847--131Chr05:21527377..21527401 (25 bp)
ATTAATTCCGTTTGTCTTTGTGCTA
LOC_Os05g36990
Os.10101.1.S1_at--169--2511Chr05:21527352..21527376 (25 bp)
AACTGTAGTAGCACTTTCCAATTGA
LOC_Os05g36990
Os.10101.1.S1_at--1091--4851Chr05:21527312..21527336 (25 bp)
GCTAGCCTCCGGTTAATCATGGATC
LOC_Os05g36990
Os.10101.1.S1_at--726--7951Chr05:21527292..21527316 (25 bp)
GGATCAATGCCAGATTACCGATAAT
LOC_Os05g36990
Os.10101.1.S1_at--395--9971Chr05:21527277..21527301 (25 bp)
TACCGATAATGCACATGACTCCTCC
LOC_Os05g36990
Os.10101.1.S1_at--813--9951Chr05:21527252..21527276 (25 bp)
TACCCGTCGTGTATCAAGCTTGCAT
LOC_Os05g36990
Target Sequence 
GGCCATATCTCTTTCAGGCTAAGGTAAAATAACTAAAGCTAGCCCCGAGACAATGCGGGCTGGCTACCTACGTGTGTGTG
TGCGCGTGTTAATTAATTCCGTTTGTCTTTGTGCTAAACTGTAGTAGCACTTTCCAATTGAATGACGAAGTAGCTAGCTA
GCCTCCGGTTAATCATGGATCAATGCCAGATTACCGATAATGCACATGACTCCTCCTACCCGTCGTGTATCAAGCTTGCA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis