Browse Element(s) Details


OsAffx.14988.1.S1_x_at

Description tigr:9633.m03409
TID=OsAffx.14988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3698011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein
LOC_Os05g36960Os.53685.1.S1_at11/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36960Os.49478.1.S1_at1/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36970OsAffx.14987.1.S1_at11/115+21512670..21513839uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g36980OsAffx.14988.1.S1_x_at11/115+21515492..21520139hypothetical protein
LOC_Os05g36980OsAffx.14988.2.S1_x_at6/115+21515492..21520139hypothetical protein
LOC_Os05g36990Os.10101.1.S1_at11/115+21527207..21528419uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g37000NANA5+21540718..21542173hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14988.1.S1_x_at--621--2191Chr05:21516638..21516662 (25 bp)
ACACAGAGCGCAGTGGCTACAGCGT
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--300--4131Chr05:21516630..21516654 (25 bp)
CGCAGTGGCTACAGCGTCGTCATCA
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--173--9411Chr05:21516614..21516638 (25 bp)
TCGTCATCATCGTGGGAGCGCTGGA
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--153--4151Chr05:21516550..21516574 (25 bp)
CGCGGCAGCGCTAGACACGGAGGCC
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--915--7571Chr05:21516500..21516524 (25 bp)
GGGCGGTTGTGTCGTGGGATGCGGA
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--52--811Chr05:21516433..21516457 (25 bp)
ATGGGATACAGAGCCGGCGTCGCTA
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--523--4011Chr05:21516416..21516440 (25 bp)
CGTCGCTACCCGCTGCTCGACGATG
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--631--1871Chr05:21516388..21516412 (25 bp)
ACGAGAGAGGGAGTGTGCCGAGATC
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--562--1091Chr05:21516377..21516401 (25 bp)
AGTGTGCCGAGATCAGGGACGGTGC
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--442--7611Chr05:21515999..21516023 (25 bp)
GGGAATTCAACCGACCACAATAATT
LOC_Os05g36980
OsAffx.14988.1.S1_x_at--964--10491Chr05:21515994..21516018 (25 bp)
TTCAACCGACCACAATAATTCCGGG
LOC_Os05g36980
Target Sequence 
ACACAGAGCGCAGTGGCTACAGCGTCGTCATCATCGTGGGAGCGCTGGACACGGAGGCCGCGGCGGCGGCGGCGCAGGAC
GTGGAGGCCGCGGCAGCGCTAGACACGGAGGCCGCGGCGGCGCGGGATGCGGGGGTGGGGGCGGTTGTGTCGTGGGATGC
GGAGGCGGTGGCGGCGGCAGTGTGGGATGCGAAGGCGGCGGAGGCATGGGATACAGAGCCGGCGTCGCTACCCGCTGCTC
GACGATGGAGACGAGAGAGGGAGTGTGCCGAGATCAGGGACGGTGCGGGGGCCGGCGGGGGAATTCAACCGACCACAATA
ATTCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14988.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis