Browse Element(s) Details


Os.53685.1.S1_at

Description gb:AK073901.1
DB_XREF= gi:32983924
TID=Os.53685.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071K16, full insert sequence.
FL= gb:AK073901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3696011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36920Os.4894.1.S1_a_at11/115+21478189..21481136Histone deacetylase family protein, expressed
LOC_Os05g36930Os.27331.1.S1_at11/115+21484176..21488626Histone deacetylase family protein, expressed
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein
LOC_Os05g36960Os.53685.1.S1_at11/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36960Os.49478.1.S1_at1/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36970OsAffx.14987.1.S1_at11/115+21512670..21513839uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g36980OsAffx.14988.1.S1_x_at11/115+21515492..21520139hypothetical protein
LOC_Os05g36980OsAffx.14988.2.S1_x_at6/115+21515492..21520139hypothetical protein
LOC_Os05g36990Os.10101.1.S1_at11/115+21527207..21528419uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53685.1.S1_at--850--6351Chr05:21509657..21509681 (25 bp)
GATCCAAACTCAACGTGCCTGAAAC
LOC_Os05g36960
Os.53685.1.S1_at--427--7391Chr05:21509725..21509749 (25 bp)
GTGAGATTATCTACCGCCATGGACG
LOC_Os05g36960
Os.53685.1.S1_at--377--471Chr05:21509796..21509820 (25 bp)
ATCTCCTGCCAAGGAAGCTCTTGAT
LOC_Os05g36960
Os.53685.1.S1_at--990--6771Chr05:21509821..21509845 (25 bp)
GTTACGTCATTTAGGCAGCGAGCTG
LOC_Os05g36960
Os.53685.1.S1_at--1107--5911Chr05:21509866..21509890 (25 bp)
GAGCTTTCTGCGGACTTGCTGGAAA
LOC_Os05g36960
Os.53685.1.S1_at--628--6191Chr05:21509902..21509926 (25 bp)
GAGGAACTCGCCATTGTTCTACAGC
LOC_Os05g36960
Os.53685.1.S1_at--891--8171Chr05:21509933..21509957 (25 bp)
GGAAGAACAAGGTCTCCCCGCGAGA
LOC_Os05g36960
Os.53685.1.S1_at--193--8471Chr05:21510009..21510033 (25 bp)
TGGCCGCCTGTCGATGTGAGTATCT
LOC_Os05g36960
Os.53685.1.S1_at--485--10691Chr05:21510056..21510080 (25 bp)
TTGCTTTCCCCTTTGCTTTTTTGAG
LOC_Os05g36960
Os.53685.1.S1_at--1088--1091Chr05:21510089..21510113 (25 bp)
AGTGGGCTTGATTTGCTGACAGCGT
LOC_Os05g36960
Os.53685.1.S1_at--271--3291Chr05:21510158..21510182 (25 bp)
CAAACCATTCTTTTTGGCGCATGTT
LOC_Os05g36960
Target Sequence 
GATCCAAACTCAACGTGCCTGAAACTAATCTTGCCAGTAACATATCCATACCATCCATATCAGAAGCAGTGAGATTATCT
ACCGCCATGGACGTTAAACCGTACACGTCCGAGGCCAGCAATGGAGTCAAGGAGGAGGCATCTCCTGCCAAGGAAGCTCT
TGATGTTACGTCATTTAGGCAGCGAGCTGAGGCTCTAGAAGGTCTCTTGGAGCTTTCTGCGGACTTGCTGGAAAACAACA
GGTTGGAGGAACTCGCCATTGTTCTACAGCCTTTCGGGAAGAACAAGGTCTCCCCGCGAGAGACCGCAATTTGGTTGGCC
AGAAGTTTCAAAGGAATGATGAACGAAGAAGGTGGCCGCCTGTCGATGTGAGTATCTGTAACCTTAAAAGGCCTTTTTAT
TGCTTTCCCCTTTGCTTTTTTGAGTAGCTCAAAGTGGGCTTGATTTGCTGACAGCGTGTTGTGTTTGTGTTGCCCGGTTT
TGTTTTTTGTTTCTTTTGATTCAAACCATTCTTTTTGGCGCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis