Browse Element(s) Details


Os.27331.1.S1_at

Description gb:AK068179.1
DB_XREF= gi:32978197
TID=Os.27331.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132M17, full insert sequence.
FL= gb:AK068179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3693011/11Histone deacetylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36400NANA5+21456602..21461339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36900OsAffx.14985.1.S1_at11/115+21472368..21473351Dof domain, zinc finger family protein
LOC_Os05g36910Os.4894.2.S1_a_at11/115+21474180..21476854NC domain-containing protein, putative, expressed
LOC_Os05g36920Os.4894.1.S1_a_at11/115+21478189..21481136Histone deacetylase family protein, expressed
LOC_Os05g36930Os.27331.1.S1_at11/115+21484176..21488626Histone deacetylase family protein, expressed
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein
LOC_Os05g36960Os.53685.1.S1_at11/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36960Os.49478.1.S1_at1/115+21504631..21510231Protein kinase domain containing protein, expressed
LOC_Os05g36970OsAffx.14987.1.S1_at11/115+21512670..21513839uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016575biological_processhistone deacetylation
GO:0045604biological_processregulation of epidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004406molecular_functionH3/H4 histone acetyltransferase activity
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27331.1.S1_at--229--3851Chr05:21484574..21484598 (25 bp)
CTGCATGCAACGCTGGAAGGTGTTT
LOC_Os05g36930
Os.27331.1.S1_at--336--1051Chr05:21484557..21484581 (25 bp)
AGGTGTTTTGAATCTGCAGGCCCCA
LOC_Os05g36930
Os.27331.1.S1_at--182--851Chr05:21484540..21484564 (25 bp)
AGGCCCCATTGCTTGATGACCCATT
LOC_Os05g36930
Os.27331.1.S1_at--447--8931Chr05:21484524..21484548 (25 bp)
TGACCCATTGGGTTTTTATCCAGAT
LOC_Os05g36930
Os.27331.1.S1_at--321--5171Chr05:21484482..21484506 (25 bp)
GCAAGCCGTGGACATCATCAAGAAA
LOC_Os05g36930
Os.27331.1.S1_at--97--1331Chr05:21484393..21484417 (25 bp)
AGAGTCTAGGCTCATGGTCTTTCGC
LOC_Os05g36930
Os.27331.1.S1_at--531--7811Chr05:21484378..21484402 (25 bp)
GGTCTTTCGCCTTAAAGTACATATG
LOC_Os05g36930
Os.27331.1.S1_at--209--5971Chr05:21484348..21484372 (25 bp)
GAGAAGCATCCGAATGCTTGCCCCT
LOC_Os05g36930
Os.27331.1.S1_at--1066--5431Chr05:21484318..21484342 (25 bp)
GAACGACCTCCAAATTTTCAATTCT
LOC_Os05g36930
Os.27331.1.S1_at--634--6971Chr05:21484266..21484290 (25 bp)
GTACCATTGTTTACTTGCAGAACCA
LOC_Os05g36930
Os.27331.1.S1_at--283--10511Chr05:21484204..21484228 (25 bp)
TTCAACCCCTTTACTATATAGCAGA
LOC_Os05g36930
Target Sequence 
CTGCATGCAACGCTGGAAGGTGTTTTGAATCTGCAGGCCCCATTGCTTGATGACCCATTGGGTTTTTATCCAGATGATGA
AAAATACACCATGCAAGCCGTGGACATCATCAAGAAATGCTGGAAAGAATCTATTCCGTTCTTGAAGGATATATAGAAAT
CCAAGCCTCAATTTCATATCAAGAGTCTAGGCTCATGGTCTTTCGCCTTAAAGTACATATGTACTGGAGAAGCATCCGAA
TGCTTGCCCCTCTCATGAACGACCTCCAAATTTTCAATTCTCACTGGTATTGTATGTATCATGTAGTTGTACCATTGTTT
ACTTGCAGAACCAGTAAGAAATAACAGGGGTTAAACAAACTAGACAAAACTTCAACCCCTTTACTATATAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis