Browse Element(s) Details


Os.4894.2.S1_a_at

Description gb:AK072962.1
DB_XREF= gi:32982985
TID=Os.4894.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149P14, full insert sequence.
FL= gb:AK072962.1 gb:AK059585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3691011/11NC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36390OsAffx.22848.3.S1_x_at2/115+21452268..21454435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36400NANA5+21456602..21461339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g36900OsAffx.14985.1.S1_at11/115+21472368..21473351Dof domain, zinc finger family protein
LOC_Os05g36910Os.4894.2.S1_a_at11/115+21474180..21476854NC domain-containing protein, putative, expressed
LOC_Os05g36920Os.4894.1.S1_a_at11/115+21478189..21481136Histone deacetylase family protein, expressed
LOC_Os05g36930Os.27331.1.S1_at11/115+21484176..21488626Histone deacetylase family protein, expressed
LOC_Os05g36940NANA5+21490995..21495302retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36950OsAffx.14986.1.S1_at11/115+21496386..21496662hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4894.2.S1_a_at--1135--91Chr05:21474689..21474713 (25 bp)
ATTCGTGCCGTGGAGAACATCAGTC
LOC_Os05g36910
Os.4894.2.S1_a_at--445--2511Chr05:21474674..21474698 (25 bp)
AACATCAGTCAGTTGGTTGCTCCGG
LOC_Os05g36910
Os.4894.2.S1_a_at--930--6671Chr05:21474617..21474641 (25 bp)
GTTGCTGCTTAAAGTGCACCACTGA
LOC_Os05g36910
Os.4894.2.S1_a_at--71--451Chr05:21474591..21474615 (25 bp)
ATCTATACATTACTCCAGACCTTCT
LOC_Os05g36910
Os.4894.2.S1_a_at--276--31Chr05:21474523..21474547 (25 bp)
ATTGTGTACCAGAGTGAGCCTCCCA
LOC_Os05g36910
Os.4894.2.S1_a_at--1068--4011Chr05:21474457..21474481 (25 bp)
CGTTTCTGCCATCAACTGTTATGTG
LOC_Os05g36910
Os.4894.2.S1_a_at--539--791Chr05:21474437..21474461 (25 bp)
ATGTGTGGCTTATCTACTGTTGTAT
LOC_Os05g36910
Os.4894.2.S1_a_at--962--7471Chr05:21474395..21474419 (25 bp)
GTGTGGTGCTTGTCGATTTGCAACT
LOC_Os05g36910
Os.4894.2.S1_a_at--296--6611Chr05:21474367..21474391 (25 bp)
GATTGTGACAGCTCTCTTATTTTAG
LOC_Os05g36910
Os.4894.2.S1_a_at--956--231Chr05:21474297..21474321 (25 bp)
ATATAATTCACCTGACCTGAGCCAA
LOC_Os05g36910
Os.4894.2.S1_a_at--260--7891Chr05:21474259..21474283 (25 bp)
GGTTAACTTTCATTCATGGCCTCAT
LOC_Os05g36910
Target Sequence 
ATTCGTGCCGTGGAGAACATCAGTCAGTTGGTTGCTCCGGCAGAAGCCCAAGGTCTGGCCGTAACCGCACCTGTTGCTGC
TTAAAGTGCACCACTGAGATCTATACATTACTCCAGACCTTCTGCTGCTAAATTTATGGATGTTTCGTTGTCAAATATCA
GCTGAAATTGTGTACCAGAGTGAGCCTCCCATTCAGCAATAGCTGTACAAACAATGAAAAAACTTATACGCCCGTTTCTG
CCATCAACTGTTATGTGTGGCTTATCTACTGTTGTATAAATTATGAACATGGAAGTGTGGTGCTTGTCGATTTGCAACTC
AAGATTGTGACAGCTCTCTTATTTTAGGCAGTAATTCCACTTCATTAGGAGACGTTTGCTTGTAAGTGGGAAATATAATT
CACCTGACCTGAGCCAACTTGGGATGTAGAGGTTAACTTTCATTCATGGCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4894.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis