Browse Element(s) Details


Os.9217.1.S1_at

Description gb:AK073075.1
DB_XREF= gi:32983098
TID=Os.9217.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033007H18, full insert sequence.
FL= gb:AK109344.2 gb:AK073075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4898011/11Ras-related protein Rab11B, putative, expressed
LOC_Os05g371301/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9217.1.S1_at--748--5811Chr05:28010144..28010168 (25 bp)
GACGCCAACATCGTGATCATGCTTG
LOC_Os05g48980
Os.9217.1.S1_at--248--1271Chr05:28010106..28010130 (25 bp)
AGATTTGCGCCACCTTAGGGCTGTC
LOC_Os05g48980
Os.9217.1.S1_at--130--1751Chr05:28010095..28010119 (25 bp)
ACCTTAGGGCTGTCTCGACTGAGGA
LOC_Os05g48980
Os.9217.1.S1_at--314--1131Chr05:28010029..28010053 (25 bp)
AGACGTCGGCCCTGGAGTCAATGAA
LOC_Os05g48980
Os.9217.1.S1_at--22--5291Chr05:28010007..28010031 (25 bp)
GAATGTGGAGAATGCCTTCACTGAA
LOC_Os05g48980
Os.9217.1.S1_at--391--5271Chr05:28009998..28010022 (25 bp)
GAATGCCTTCACTGAAGTGCTCACC
LOC_Os05g48980
Os.9217.1.S1_at--516--5331Chr05:28009985..28010009 (25 bp)
GAAGTGCTCACCCAGATATATCATG
LOC_Os05g48980
Os.9217.1.S1_at--86--4031Chr05:28009636..28009660 (25 bp)
CGTCAGATTTTCATACAGGCCATTT
LOC_Os05g48980
Os.9217.1.S1_at--702--3492Chr05:28009621..28009645 (25 bp)
CAGGCCATTTGTTTGCTTCTATTAT
LOC_Os05g48980
Os.9217.1.S1_at--1039--10251Chr05:28009610..28009634 (25 bp)
TTTGCTTCTATTATGGTTTGACCGC
LOC_Os05g48980
Os.9217.1.S1_at--95--831Chr05:28009598..28009622 (25 bp)
ATGGTTTGACCGCTTGATTTATTTA
LOC_Os05g48980
Target Sequence 
GACGCCAACATCGTGATCATGCTTGTGGGGAACAAGGCAGATTTGCGCCACCTTAGGGCTGTCTCGACTGAGGATGCGAA
AGCATTTGCTGAGAAAGAGAACACTTTCTTCATGGAGACGTCGGCCCTGGAGTCAATGAATGTGGAGAATGCCTTCACTG
AAGTGCTCACCCAGATATATCATGTAGTGAGCAAGAAGGCTCTTGACATCGGCGATGACCCAGCTGCACCACCAAAGGGG
CAGACCATCAATGTTGGTGGCAAAGATGATGTCTCTGCAGTGAAAAAGTCTGCTTGTTGTTCATCAGCGTAGATCGAAAG
GACTTGACAAACATGGAGATACCCGAGGTGGTTGATACTATGCAGTAGGACACAGGATGTTATTGCATTCATAGACCTCA
TCTGTATTCATGTGTTACTAAGTGTCTCCTTCGTTTTGCCATTTGAAACATTAATTCATTCAGGACATAATCTTGCCGGT
ATAGTTTAGGGATATGAAATTGTGAGGCCGTCAGATTTTCATACAGGCCATTTGTTTGCTTCTATTATGGTTTGACCGCT
TGATTTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis