Browse Element(s) Details


Os.8092.1.S1_at

Description gb:AK070198.1
DB_XREF= gi:32980222
TID=Os.8092.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8092 (NCBI UniGene Cluster)
UG_TITLE=MRNA for U2 snRNP auxiliary factor, small subunit 35b
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041B11, full insert sequence.
FL= gb:AK070198.1 gb:AK104767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4896011/11Splicing factor U2AF 35 kDa subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8092.1.S1_at--605--3051Chr05:27999040..27999064 (25 bp)
AATCGTGACCGTGATGATTTCCGCC
LOC_Os05g48960
Os.8092.1.S1_at--1118--6511Chr05:27999055..27999079 (25 bp)
GATTTCCGCCGTGAACGTGATGGTT
LOC_Os05g48960
Os.8092.1.S1_at--788--10451Chr05:27999135..27999159 (25 bp)
TTACCGCGGCGGTGATAGTTACCGT
LOC_Os05g48960
Os.8092.1.S1_at--1023--10151Chr05:27999350..27999374 (25 bp)
TATCTCTATGGATGGCCGGTTCATG
LOC_Os05g48960
Os.8092.1.S1_at--33--8471Chr05:27999362..27999386 (25 bp)
TGGCCGGTTCATGCCTTCATGGCAA
LOC_Os05g48960
Os.8092.1.S1_at--127--10551Chr05:27999377..27999401 (25 bp)
TTCATGGCAATCACTATCCGCTGGA
LOC_Os05g48960
Os.8092.1.S1_at--764--7311Chr05:27999410..27999434 (25 bp)
GTGCTGCTATGTTCTAAGTGGATAT
LOC_Os05g48960
Os.8092.1.S1_at--787--7451Chr05:27999442..27999466 (25 bp)
GTGTCGTTTGGTACTCATGCTTGGC
LOC_Os05g48960
Os.8092.1.S1_at--273--3531Chr05:27999457..27999481 (25 bp)
CATGCTTGGCTGAGTAACCCTTTTA
LOC_Os05g48960
Os.8092.1.S1_at--523--10331Chr05:27999503..27999527 (25 bp)
TTTACATTGTGTTTCGTTTGACGTG
LOC_Os05g48960
Os.8092.1.S1_at--651--5191Chr05:27999553..27999577 (25 bp)
GCAATATTGGATCTTTTGTCAGTCT
LOC_Os05g48960
Target Sequence 
AATCGTGACCGTGATGATTTCCGCCGTGAACGTGATGGTTATCGTGGTGGTGGTGATGGTTACCGTGGCGGCGGCGGTGG
CGGTGGTGGTGACGGTTACCGCGGCGGTGATAGTTACCGTGGTGGTGGTGGTGGTGGACGCAGGGGTGGGGGCAGCAGGT
ATGACAGGTATGATGATGGAGGAAGGCGCAGGCATGGCAGCCCCCCAAGGCGTGCAAGGAGCCCAGTCAGGGAAAGCAGC
GAGGAACGCAGGGCGAAGATTGAACAGTGGAACCGTGAACGGGAGGAAAAGCCTTGAACGAAAGCAGTGATATCTCTATG
GATGGCCGGTTCATGCCTTCATGGCAATCACTATCCGCTGGAGTCGTGGTGTGCTGCTATGTTCTAAGTGGATATTTAGT
GTGTGTCGTTTGGTACTCATGCTTGGCTGAGTAACCCTTTTAAATGCAGGATTCTGGATTCTATTTACATTGTGTTTCGT
TTGACGTGTAAACCGCCGTTTGTTTTTAAATATGCAATATTGGATCTTTTGTCAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis