Browse Element(s) Details


OsAffx.15162.1.S1_at

Description tigr:9633.m04584
TID=OsAffx.15162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4894011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48890OsAffx.15160.1.S1_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48890OsAffx.15160.1.S1_s_at11/115+27964097..27965043Fasciclin domain containing protein, expressed
LOC_Os05g48900Os.53704.1.S1_x_at11/115+27968486..27969669Fasciclin domain containing protein, expressed
LOC_Os05g48910OsAffx.21756.3.S1_x_at5/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910Os.13704.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.21756.2.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48910OsAffx.20387.1.S1_x_at1/115+27973247..27979813retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g48920NANA5+27980193..27980846hypothetical protein
LOC_Os05g48930Os.9829.1.S1_at11/115+27984566..27985298Glutaredoxin-like family protein, expressed
LOC_Os05g48940OsAffx.15162.1.S1_at11/115+27989520..27993210expressed protein
LOC_Os05g48950NANA5+27994109..27995255expressed protein
LOC_Os05g48960Os.8092.1.S1_at11/115+27996940..27999619Splicing factor U2AF 35 kDa subunit, putative, expressed
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15162.1.S1_at--412--3231Chr05:27990434..27990458 (25 bp)
CAAGACTAGTTCTCACTCTGTGCAT
LOC_Os05g48940
OsAffx.15162.1.S1_at--860--9731Chr05:27990326..27990350 (25 bp)
TAATACGCTTGGTGGAACTCATCTT
LOC_Os05g48940
OsAffx.15162.1.S1_at--544--2531Chr05:27990311..27990335 (25 bp)
AACTCATCTTTCTGGCTCCAATTTA
LOC_Os05g48940
OsAffx.15162.1.S1_at--988--5551Chr05:27990227..27990251 (25 bp)
GAAAGTTACACCTAGCACTTCATCC
LOC_Os05g48940
OsAffx.15162.1.S1_at--141--5731Chr05:27990191..27990215 (25 bp)
GACTGCTGCTTGTGACGATGCTCTA
LOC_Os05g48940
OsAffx.15162.1.S1_at--500--5771Chr05:27990178..27990202 (25 bp)
GACGATGCTCTAGATGACTTGCTTT
LOC_Os05g48940
OsAffx.15162.1.S1_at--245--8951Chr05:27990164..27990188 (25 bp)
TGACTTGCTTTCAGAGACTTCTCCT
LOC_Os05g48940
OsAffx.15162.1.S1_at--693--5691Chr05:27990149..27990173 (25 bp)
GACTTCTCCTTCTGTCCAGAATGAA
LOC_Os05g48940
OsAffx.15162.1.S1_at--178--6811Chr05:27990123..27990147 (25 bp)
GTTTTGCTGAACCAGGCTCAACTTC
LOC_Os05g48940
OsAffx.15162.1.S1_at--404--211Chr05:27990033..27990057 (25 bp)
ATTTGGTGGACGACTTGCTCACTGA
LOC_Os05g48940
OsAffx.15162.1.S1_at--289--9731Chr05:27989947..27989971 (25 bp)
TCAAGTGTCAGTGTTCCTCCTAATT
LOC_Os05g48940
Target Sequence 
CAAGACTAGTTCTCACTCTGTGCATTTGGACACTGGAGAAGATAATAACAATAGTGAAGGGGCAAAGTTTGAGGTGGTTG
CTGCAGAAGAAGAACTTGATATGCTTCTTAATACGCTTGGTGGAACTCATCTTTCTGGCTCCAATTTAGATGAATCATTT
GGAAACAAATCAACATTGCAAGATGTGAAAGTCAATCAACCAGATAAGAAAGTTACACCTAGCACTTCATCCAAATCATC
GGTGACTGCTGCTTGTGACGATGCTCTAGATGACTTGCTTTCAGAGACTTCTCCTTCTGTCCAGAATGAAGGTTTTGCTG
AACCAGGCTCAACTTCCAAGAATGACCACAATATTGACATCAGATATGCTAACCAGATAGATATATCTACATCTATTGAT
GATTTGGTGGACGACTTGCTCACTGACACTTCACTGTGCTTGAATGGACAGAAACAAACTACATCTGCTAAGGGCAAAGA
CAACATCTCAAGTGTCAGTGTTCCTCCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis