Browse Element(s) Details


Os.7665.1.S1_at

Description gb:AK066638.1
DB_XREF= gi:32976656
TID=Os.7665.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074N08, full insert sequence.
FL= gb:AK066638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5624011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein
LOC_Os04g56284Os.50886.1.S1_at10/114+33335765..33336297expressed protein
LOC_Os04g56290Os.9181.1.S1_x_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed
LOC_Os04g56290Os.35113.1.S1_at11/114+33338235..33344907Possible apospory-associated protein C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7665.1.S1_at--283--8051Chr04:33314119..33314143 (25 bp)
GGAGTTCGCGACGAGCCGCATCAAC
LOC_Os04g56240
Os.7665.1.S1_at--701--6691Chr04:33314260..33314284 (25 bp)
GTTCCACAGGGTGCAGGACTACGTC
LOC_Os04g56240
Os.7665.1.S1_at--959--951Chr04:33314274..33314298 (25 bp)
AGGACTACGTCAATGCCGTCACGCT
LOC_Os04g56240
Os.7665.1.S1_at--760--8311Chr04:33314303..33314327 (25 bp)
GGCTCGAACATTCCCAAGGACATGT
LOC_Os04g56240
Os.7665.1.S1_at--1120--4051Chr04:33314330..33314354 (25 bp)
CGATGTATCGAGTTTCTGAATGCAA
LOC_Os04g56240
Os.7665.1.S1_at--676--1971Chr04:33314365..33314389 (25 bp)
ACTGCAGCTGCAGGCATCAAACTTG
LOC_Os04g56240
Os.7665.1.S1_at--399--1291Chr04:33314420..33314444 (25 bp)
AGATGACGACTGCATCGAGCAGGCT
LOC_Os04g56240
Os.7665.1.S1_at--221--7051Chr04:33314463..33314487 (25 bp)
GTAACTGTAATGTGACGTACGTACT
LOC_Os04g56240
Os.7665.1.S1_at--65--7351Chr04:33314506..33314530 (25 bp)
GTGCAACTGTATGTTGTCGCGACTA
LOC_Os04g56240
Os.7665.1.S1_at--123--9331Chr04:33314522..33314546 (25 bp)
TCGCGACTAATTCTGCTTCTACTGA
LOC_Os04g56240
Os.7665.1.S1_at--57--7071Chr04:33314590..33314614 (25 bp)
GTAAGCATTTGATGTACTGGGACAA
LOC_Os04g56240
Target Sequence 
GGAGTTCGCGACGAGCCGCATCAACGCGGCGTGGGAGCTGGCCCGGAGCGCGTACCTGGGGTACTGGAGGAGCGCCTACT
GCCGGGAAGGGTGGCTGCTGATGGCGGCGAGGGCGGCGGCGGTGGCGCTGCCTGGCCTGCCNGTTCCACAGGGTGCAGGA
CTACGTCAATGCCGTCACGCTCGCCGGCTCGAACATTCCCAAGGACATGTGACGATGTATCGAGTTTCTGAATGCAATGC
TGCAGAGACTGCAGCTGCAGGCATCAAACTTGGATGAGAGATTGCAACTGCAATATAATGGCAGATGACGACTGCATCGA
GCAGGCTATGGGNCTTGTCACTTGTGTAACTGTAATGTGACGTACGTACTGGTAGTAATTAATTACGGGTGCAACTGTAT
GTTGTCGCGACTAATTCTGCTTCTACTGAATAAACATGTAGTGATAAGTGATATGCTTGTGAGTTGTGACTTGTAAGCAT
TTGATGTACTGGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis