Browse Element(s) Details


Os.50838.1.A1_at

Description gb:AK058886.1
DB_XREF= gi:32968904
TID=Os.50838.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-C06, full insert sequence.
FL= gb:AK058886.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g561806/11Peroxidase 45 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56170Os.52576.1.S1_at11/114+33269440..33273790LIGULELESS1 protein, putative, expressed
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50838.1.A1_at--885--10491Chr04:33281340..33281364 (25 bp)
TTCAACAACCTCCGCTACAACAAGG
LOC_Os04g56180
Os.50838.1.A1_at--605--9031Chr04:33281148..33281172 (25 bp)
TGCACCGCCGTCAACTAGCTTGTTT
LOC_Os04g56180
Os.50838.1.A1_at--494--4151Chr04:33281143..33281167 (25 bp)
CGCCGTCAACTAGCTTGTTTACGTA
LOC_Os04g56180
Os.50838.1.A1_at--914--10011Chr04:33281133..33281157 (25 bp)
TAGCTTGTTTACGTAGTACTTGCAT
LOC_Os04g56180
Os.50838.1.A1_at--1018--1871Chr04:33281123..33281147 (25 bp)
ACGTAGTACTTGCATATCATCTTCT
LOC_Os04g56180
Os.50838.1.A1_at--657--4951Chr04:33281112..33281136 (25 bp)
GCATATCATCTTCTGCTACTTAAAA
LOC_Os04g56180
Os.50838.1.A1_at--715--9911Chr04:33281033..33281057 (25 bp)
TACGATTAATTAATTTCGGCCGCAG
NONE
Os.50838.1.A1_at--838--131Chr04:33281029..33281053 (25 bp)
ATTAATTAATTTCGGCCGCAGATGC
NONE
Os.50838.1.A1_at--167--10791Chr04:33280964..33280988 (25 bp)
TTGTTGTTTATATGTTTTGTGGTGG
NONE
Os.50838.1.A1_at--930--10231Chr04:33280949..33280973 (25 bp)
TTTGTGGTGGGATTTTGTAGCCGAT
NONE
Os.50838.1.A1_at--1141--10391Chr04:33280937..33280961 (25 bp)
TTTTGTAGCCGATTCTTTGAGCTGA
NONE
Target Sequence 
TTCAACAACCTCCGCTACAACAAGGGCCTCCTCGCCTCCGACCAGATCCTCTTCACCGACCGCCGCTCCCGCCCCACCGT
CAACCTCTTCGCCGCCAACTCCACCGCCTTCTTCGACGCCTTCGTCGCCGCCATGGCCAAGCTCGGCAGGATCGGCGTCA
AGACCGGCTCCGACGGCGAGATCCGCCGCGTCTGCACCGCCGTCAACTAGCTTGTTTACGTAGTACTTGCATATCATCTT
CTGCTACTTAAAAAGTGGAGTACTTAGCTGGGTAGGATGGTGAAAGAAAAACACGTAGTAGTAGTACTACGATTAATTAA
TTTCGGCCGCAGATGCAGGGTGTTTTTTTTTCTTTTCTTTTTATTTTTGGTTTCTTTTTGTTGTTTATATGTTTTGTGGT
GGGATTTTGTAGCCGATTCTTTGAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50838.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis