Browse Element(s) Details


OsAffx.26630.1.S1_at

Description tigr:9632.m05477
TID=OsAffx.26630.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5622010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26630.1.S1_at--358--8831NONE
TGATCTTGTCAATGGCCCAACAACC
NONE
OsAffx.26630.1.S1_at--34--1891Chr04:33302442..33302466 (25 bp)
ACGTCCCGGCTTTACTGACACTACG
LOC_Os04g56220
OsAffx.26630.1.S1_at--424--3491Chr04:33302436..33302460 (25 bp)
CGGCTTTACTGACACTACGCTAAAT
LOC_Os04g56220
OsAffx.26630.1.S1_at--339--5631Chr04:33302426..33302450 (25 bp)
GACACTACGCTAAATCCAGCAAAGT
LOC_Os04g56220
OsAffx.26630.1.S1_at--243--5131Chr04:33302408..33302432 (25 bp)
GCAAAGTTCATGGACGAACATGCAT
LOC_Os04g56220
OsAffx.26630.1.S1_at--770--5491Chr04:33302393..33302417 (25 bp)
GAACATGCATGTTCCGGCGATCAAC
LOC_Os04g56220
OsAffx.26630.1.S1_at--309--731Chr04:33302385..33302409 (25 bp)
ATGTTCCGGCGATCAACCGGCTCAT
LOC_Os04g56220
OsAffx.26630.1.S1_at--444--6451Chr04:33302375..33302399 (25 bp)
GATCAACCGGCTCATAATCTCAGCG
LOC_Os04g56220
OsAffx.26630.1.S1_at--43--8311Chr04:33302367..33302391 (25 bp)
GGCTCATAATCTCAGCGGTTTCCGC
LOC_Os04g56220
OsAffx.26630.1.S1_at--114--371Chr04:33302362..33302386 (25 bp)
ATAATCTCAGCGGTTTCCGCACCTG
LOC_Os04g56220
OsAffx.26630.1.S1_at--1156--3351Chr04:33302343..33302367 (25 bp)
CACCTGCCACTGTTGCAGCAACAGG
LOC_Os04g56220
Target Sequence 
TGATCTTGTCAATGGCCCAACAACCCCACGTCCCGGCTTTACTGACACTACGCTAAATCCAGCAAAGTTCATGGACGAAC
ATGCATGTTCCGGCGATCAACCGGCTCATAATCTCAGCGGTTTCCGCACCTGCCACTGTTGCAGCAACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis