Browse Element(s) Details


Os.22651.1.S1_at

Description gb:CB624212
DB_XREF= gi:29619200
DB_XREF=OSIIEa12J04.r
CLONE=OSIIEa12J04
TID=Os.22651.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.22651 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_199588.1 (A.thaliana) AAB49290.1) (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5623010/11Farnesyl pyrophosphate synthetase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56180Os.57372.1.S1_at11/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56180Os.50838.1.A1_at6/114+33281042..33287010Peroxidase 45 precursor, putative, expressed
LOC_Os04g56190OsAffx.14433.1.S1_at11/114+33292622..33293447hypothetical protein
LOC_Os04g56200OsAffx.26629.1.S1_at11/114+33296749..33297386hypothetical protein
LOC_Os04g56210Os.25054.1.S1_at11/114+33298158..33300981Farnesyl pyrophosphate synthetase 1, mitochondrial precursor, putative, expressed
LOC_Os04g56220OsAffx.26630.1.S1_at10/114+33302307..33303570hypothetical protein
LOC_Os04g56220OsAffx.22651.3.A1_x_at1/114+33302307..33303570hypothetical protein
LOC_Os04g56230Os.22651.1.S1_at10/114+33305663..33309387Farnesyl pyrophosphate synthetase 2, putative, expressed
LOC_Os04g56240Os.7665.1.S1_at11/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56240Os.57060.1.S1_at1/114+33311091..33314675Lipase family protein, expressed
LOC_Os04g56250Os.49955.1.A1_at11/114+33315321..33316613F-box domain containing protein, expressed
LOC_Os04g56260OsAffx.22848.3.S1_x_at3/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_x_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56260OsAffx.22848.4.S1_at2/114+33320213..33326170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56280OsAffx.4192.1.S1_at11/114+33332642..33333798hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045337biological_processfarnesyl diphosphate biosynthesis
GO:0004161molecular_functiondimethylallyltranstransferase activity
GO:0004337molecular_functiongeranyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22651.1.S1_at--243--5331Chr04:33306385..33306409 (25 bp)
GAAGTCTGACCCAAAATGCGTAGCA
LOC_Os04g56230
Os.22651.1.S1_at--1055--4631Chr04:33306350..33306374 (25 bp)
GCGTTTACAGGGAGCTTGATCTTCA
LOC_Os04g56230
Os.22651.1.S1_at--957--1251Chr04:33306109..33306133 (25 bp)
AGAGTTTACAAGCACCTGGTTTCGA
LOC_Os04g56230
Os.22651.1.S1_at--77--5991Chr04:33306073..33306097 (25 bp)
GAGACTGACCGTGCAATTCGGGATA
LOC_Os04g56230
Os.22651.1.S1_at--246--6951Chr04:33306008..33306032 (25 bp)
GTAGAAACACCTTTCCACAGTGGCT
LOC_Os04g56230
Os.22651.1.S1_at--747--3311Chr04:33305993..33306017 (25 bp)
CACAGTGGCTGCTTGAGTTCGGACA
LOC_Os04g56230
Os.22651.1.S1_at--103--1211Chr04:33305978..33306002 (25 bp)
AGTTCGGACACAACCGCTTGGCAAG
LOC_Os04g56230
Os.22651.1.S1_at--400--6351Chr04:33305939..33305963 (25 bp)
GATGCGATGCGCTACATTGAATGAC
LOC_Os04g56230
Os.22651.1.S1_at--734--5271Chr04:33305921..33305945 (25 bp)
GAATGACATGCATATGCCCTCTGAT
LOC_Os04g56230
Os.22651.1.S1_at--1103--251Chr04:33305910..33305934 (25 bp)
ATATGCCCTCTGATACTGTTCACAA
LOC_Os04g56230
Os.22651.1.S1_at--438--1331NONE
AGAGGATACCGCCATGCACGCATGT
NONE
Target Sequence 
GAAGTCTGACCCAAAATGCGTAGCAGAAGTGAAGAGCGTTTACAGGGAGCTTGATCTTCAGGACATATTTTTGGAGTACG
AGTCAAGAGTTTACAAGCACCTGGTTTCGACCATCGACGCCGAGACTGACCGTGCAATTCGGGATATTTTGAAGTCGTTT
CTGAAGAAGATTTACAGGAGGAAGAAGTAGAAACACCTTTCCACAGTGGCTGCTTGAGTTCGGACACAACCGCTTGGCAA
GTTGGACAGTTGGAGGATGCGATGCGCTACATTGAATGACATGCATATGCCCTCTGATACTGTTCACAAAAAAANTTGTA
ACTTCTGGAACTGGGAGAGGATACCGCCATGCACGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis