Browse Element(s) Details


OsAffx.26625.1.S1_at

Description tigr:9632.m05459
TID=OsAffx.26625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g560609/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein
LOC_Os04g56040OsAffx.26624.1.S1_at11/114+33158271..33159338Glycine rich protein family protein, expressed
LOC_Os04g56050OsAffx.4189.1.S1_at11/114+33159721..33161165hypothetical protein
LOC_Os04g56060OsAffx.26625.1.S1_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_x_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_at7/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26625.1.S1_at--813--671Chr04:33169221..33169450 (25 bp)
ATGACACAGGTACTCCACTCTAGTA
LOC_Os04g56060
OsAffx.26625.1.S1_at--269--7851Chr04:33169434..33169458 (25 bp)
GGTACTCCACTCTAGTACTAGTACT
LOC_Os04g56060
OsAffx.26625.1.S1_at--42--5591Chr04:33169463..33169487 (25 bp)
GAAATGGACCATTCATCATTGTGAA
LOC_Os04g56060
OsAffx.26625.1.S1_at--647--5311Chr04:33169485..33169509 (25 bp)
GAAGGGTTTCTTTGCTGACATCAGC
LOC_Os04g56060
OsAffx.26625.1.S1_at--935--3391Chr04:33169506..33169663 (25 bp)
CAGCTCCGAAATGGCATGGTTCAAC
LOC_Os04g56060
OsAffx.26625.1.S1_at--878--8271Chr04:33170037..33170056 (20 bp)
GGCATGGTTCAACAGCTCTATCAAA
LOC_Os04g56060
OsAffx.26625.1.S1_at--868--4811Chr04:33170046..33170070 (25 bp)
GCTCTATCAAACCATACAACGACAT
LOC_Os04g56060
OsAffx.26625.1.S1_at--657--2211NONE
AAATCAGGAGAACCGAAGGGACATT
NONE
OsAffx.26625.1.S1_at--204--7631Chr04:33171437..33171461 (25 bp)
GGGACATTGGATGCTCTGTAGCCTC
LOC_Os04g56060
OsAffx.26625.1.S1_at--219--10791Chr04:33171494..33171518 (25 bp)
TTGATTCACGAGAAGCCCAGAGCCA
LOC_Os04g56060
OsAffx.26625.1.S1_at--683--1651NONE
AGCCCAGAGCCAGGTCCTGGAGTTA
NONE
Target Sequence 
ATGACACAGGTACTCCACTCTAGTACTAGTACTACAAGAAATGGACCATTCATCATTGTGAAGGGTTTCTTTGCTGACAT
CAGCTCCGAAATGGCATGGTTCAACAGCTCTATCAAACCATACAACGACATGAAAAATCTCAACAGAAATCAGGAGAACC
GAAGGGACATTGGATGCTCTGTAGCCTCCTACCTTCTCCATTATCCTTTTCTTCCCCCCATTGATTCACGAGAAGCCCAG
AGCCAGGTCCTGGAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis