Browse Element(s) Details


Os.5753.1.S1_x_at

Description gb:AK111497.1
DB_XREF= gi:37988160
TID=Os.5753.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000H21, full insert sequence.
FL= gb:AK111497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g560609/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56020Os.40855.2.S1_x_at10/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_x_at4/114+33145067..33147112hypothetical protein
LOC_Os04g56020Os.40855.4.S1_at1/114+33145067..33147112hypothetical protein
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein
LOC_Os04g56040OsAffx.26624.1.S1_at11/114+33158271..33159338Glycine rich protein family protein, expressed
LOC_Os04g56050OsAffx.4189.1.S1_at11/114+33159721..33161165hypothetical protein
LOC_Os04g56060OsAffx.26625.1.S1_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_x_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_at7/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5753.1.S1_x_at--1002--5391Chr04:33169079..33169103 (25 bp)
GAAGCCGTACCTGAACGACTGCGTG
LOC_Os04g56060
Os.5753.1.S1_x_at--1102--1571Chr04:33169156..33169180 (25 bp)
AGCTCAGGCGGCTCATGTTCGTCGC
LOC_Os04g56060
Os.5753.1.S1_x_at--212--9971NONE
TACCATGACACAGGTCCTGGAGTTA
NONE
Os.5753.1.S1_x_at--244--8031Chr04:33172220..33172244 (25 bp)
GGAGTCCGGCGAGATATCTCAAGAT
LOC_Os04g56060
Os.5753.1.S1_x_at--620--2791Chr04:33172240..33172264 (25 bp)
AAGATCAATGGCTGATGCCCGAGGA
LOC_Os04g56060
Os.5753.1.S1_x_at--203--6571Chr04:33172362..33172386 (25 bp)
GATTCTCCCTCGATATCGTCGTCAG
LOC_Os04g56060
Os.5753.1.S1_x_at--336--3351Chr04:33172398..33172422 (25 bp)
CACGCCAATGATTAGCCCCAAAATA
LOC_Os04g56060
Os.5753.1.S1_x_at--567--6391Chr04:33172483..33172507 (25 bp)
GATCGATGGGATTATATTAGTGTAC
LOC_Os04g56060
Os.5753.1.S1_x_at--238--7451Chr04:33172502..33172526 (25 bp)
GTGTACATAAACCACCTAGACAATA
LOC_Os04g56060
Os.5753.1.S1_x_at--424--1971Chr04:33172550..33172574 (25 bp)
ACTGTTCAGGCCCATGGTTTTGATC
LOC_Os04g56060
Os.5753.1.S1_x_at--1111--10531Chr04:33172554..33172577 (24 bp)
TTCAGGCCCATGGTTTTGATCATCG
NONE
Target Sequence 
GAAGCCGTACCTGAACGACTGCGTGGCGCAGGGGCTCGTGGACCCGCGCCTCGGCGACGGCGGCTACGACGGCGCGCAGC
TCAGGCGGCTCATGTTCGTCGCGTCGCTCTGCGTCCGGCCCGCCGCGGCGTGGCGGCCTACCATGACACAGGTCCTGGAG
TTATAGGAGTCCGGCGAGATATCTCAAGATCAATGGCTGATGCCCGAGGAGGAGGAGGAANGACGAGTTTTGGGNATTTC
GACGATCTCGACGACTTCGAGGACGACGNCGNCGNCGATGATGACAACTATGATAACGNNCGATGAATCGGATTCTCCCT
CGATATCGTCGTCAGCGTGCANGCATCCACGCCAATGATTAGCCCCAAAATATTTGAGTCTGTCANGTCTTGACAGAGTG
CCCCNAATTGGTTTTGGTTTTTAGGGGATACTATGATCGATGGGATTATATTAGTGTACATAAACCACCTAGACAATAGT
AAATTCAGAAAAGAAAAAAAAACTGTTCAGGCCCATGGTTTTGATCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5753.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis