Browse Element(s) Details


OsAffx.7445.1.S1_at

Description tigr:9639.m04470
TID=OsAffx.7445.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pollen signalling protein with adenylyl cyclase activity, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4778011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7445.1.S1_at--301--1611Chr11:28254583..28254607 (25 bp)
AGCTGCAAGATAACCCTGACCTAGA
LOC_Os11g47780
OsAffx.7445.1.S1_at--977--7671Chr11:28254556..28254580 (25 bp)
GGGTCACTTCAATGCCTAGGTTGCA
LOC_Os11g47780
OsAffx.7445.1.S1_at--1008--2691Chr11:28254530..28254554 (25 bp)
AAGCTCATCATCATAGGCTGCCCGA
LOC_Os11g47780
OsAffx.7445.1.S1_at--244--6591Chr11:28254455..28254479 (25 bp)
GATTGCGACATGGAACAACTCCCGA
LOC_Os11g47780
OsAffx.7445.1.S1_at--969--2531Chr11:28254439..28254463 (25 bp)
AACTCCCGAGATACCTACAGCAAGG
LOC_Os11g47780
OsAffx.7445.1.S1_at--58--5191Chr11:28254420..28254444 (25 bp)
GCAAGGTGTGAGTCCTATGCATCTG
LOC_Os11g47780
OsAffx.7445.1.S1_at--872--4971Chr11:28254402..28254426 (25 bp)
GCATCTGGTGTTGGACTGCAGCTTA
LOC_Os11g47780
OsAffx.7445.1.S1_at--54--5631Chr11:28254231..28254255 (25 bp)
GACAAATATCGGTGACAGCCCTTCT
LOC_Os11g47780
OsAffx.7445.1.S1_at--164--1671Chr11:28254215..28254239 (25 bp)
AGCCCTTCTTCCAATTCTGGAGGTA
LOC_Os11g47780
OsAffx.7445.1.S1_at--878--10791Chr11:28254124..28254148 (25 bp)
TTGTTCCATCTTTCAACTGCATGAT
LOC_Os11g47780
OsAffx.7445.1.S1_at--1082--4291Chr11:28254092..28254116 (25 bp)
CCTACTGTTTCCATTTCGCTTAATG
LOC_Os11g47780
Target Sequence 
AGCTGCAAGATAACCCTGACCTAGAGAGGGTCACTTCAATGCCTAGGTTGCAGAAGCTCATCATCATAGGCTGCCCGAAG
ATGAGGACATTGGAGGGTGTGCCTGAGCTACGGAAGCTAGCGCTGGAGGATTGCGACATGGAACAACTCCCGAGATACCT
ACAGCAAGGTGTGAGTCCTATGCATCTGGTGTTGGACTGCAGCTTAGAGCTGCTCACATCCATAGCCCTTGGAGAATCTG
GTCCTGAGTGGGGCAAGTTGAGCCATGTCCAGCATGTCAAGGCCTATGCTGACCAAGGAGACGATAAAAGGAAGTGGCAT
GTGTTATACACAAGAGAACCCTACAGTTTCGAGACAAATATCGGTGACAGCCCTTCTTCCAATTCTGGAGGTAAATCAGC
CCAGCTGCTTCTTCTGATTTCTGTCCATAATACTCTTTTTTCCTTATTTTTACCCATGTTTGTTCCATCTTTCAACTGCA
TGATGCACCTCCCTACTGTTTCCATTTCGCTTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis