Browse Element(s) Details


Os.11025.1.S1_at

Description gb:AK105431.1
DB_XREF= gi:32990640
TID=Os.11025.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F02, full insert sequence.
FL= gb:AK105431.1 gb:AK101431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4780011/11GTP1/OBG family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47830Os.14083.1.S1_at11/1111+28287909..28294907RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11025.1.S1_at--759--9731Chr11:28265653..28265677 (25 bp)
TCAATGGTCGAAAGGGTGTCCCGCC
LOC_Os11g47800
Os.11025.1.S1_at--404--4151Chr11:28265674..28265698 (25 bp)
CGCCATGGGAGCAACTGCGGGATTT
LOC_Os11g47800
Os.11025.1.S1_at--1038--211Chr11:28265695..28265719 (25 bp)
ATTTGGTCGTGGAGCTGGAGCATTA
LOC_Os11g47800
Os.11025.1.S1_at--426--8071Chr11:28265711..28265735 (25 bp)
GGAGCATTACCAAGAAGGCCTGACA
LOC_Os11g47800
Os.11025.1.S1_at--107--2671Chr11:28265736..28265760 (25 bp)
AAGCGCCCATCATTGATTGTTGCAA
LOC_Os11g47800
Os.11025.1.S1_at--7--3471Chr11:28265817..28265841 (25 bp)
CAGGGCGTTCCAATGTTTCCAATAT
LOC_Os11g47800
Os.11025.1.S1_at--144--6851Chr11:28265831..28265855 (25 bp)
GTTTCCAATATGTGCCATCTTGCAA
LOC_Os11g47800
Os.11025.1.S1_at--668--9191Chr11:28265900..28265924 (25 bp)
TGCCTCAGATCCTCAGGGTATTGAG
LOC_Os11g47800
Os.11025.1.S1_at--368--6951Chr11:28265970..28265994 (25 bp)
GTAGAATTTTTCCTTGAGATGCTGA
LOC_Os11g47800
Os.11025.1.S1_at--1068--10231Chr11:28266011..28266035 (25 bp)
TTTGGAAAATTTCCCTCTCGGCAGT
LOC_Os11g47800
Os.11025.1.S1_at--342--3771Chr11:28266025..28266049 (25 bp)
CTCTCGGCAGTTCGTACAAATGTGT
LOC_Os11g47800
Target Sequence 
TCAATGGTCGAAAGGGTGTCCCGCCATGGGAGCAACTGCGGGATTTGGTCGTGGAGCTGGAGCATTACCAAGAAGGCCTG
ACAAAGCGCCCATCATTGATTGTTGCAAACAAAATAGATGAAGAGGGAGCCGATGAAATGTATGAAGAACTGAAGAAGAG
AGTGCAGGGCGTTCCAATGTTTCCAATATGTGCCATCTTGCAAGAGGGAGTACCAGATCTGAGAGTTGGTCTGAGAGACC
TTATGGNTGCCTCAGATCCTCAGGGTATTGAGTTGAGCAAAATTGTGGTAGATTAAATTAAGTTGAGCAAAATTATGGTA
GAATTTTTCCTTGAGATGCTGATGCAGTGGGGAAATGTTTTGGAAAATTTCCCTCTCGGCAGTTCGTACAAATGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis