Browse Element(s) Details


Os.14083.1.S1_at

Description gb:AK102518.1
DB_XREF= gi:32987727
TID=Os.14083.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095N01, full insert sequence.
FL= gb:AK102518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4783011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47830Os.14083.1.S1_at11/1111+28287909..28294907RNA recognition motif family protein, expressed
LOC_Os11g47840Os.30200.1.S1_at11/1111+28295527..28299353rhomboid family protein, putative, expressed
LOC_Os11g47850NANA11+28302815..28303450transposon protein, putative, unclassified
LOC_Os11g47860OsAffx.19432.1.S1_at11/1111+28306549..28307016hypothetical protein
LOC_Os11g47870Os.27419.1.S1_at11/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47870OsAffx.7080.1.S1_x_at2/1111+28312112..28314560GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0016607cellular_componentnuclear speck
GO:0035061cellular_componentinterchromatin granule
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14083.1.S1_at--1061--2912Chr11:28289416..28289440 (25 bp)
AAGGAGATGACCAGTATGCTTCCCC
LOC_Os11g47830
Os.14083.1.S1_at--626--6371Chr11:28289326..28289350 (25 bp)
GATCCTGCACTCCTGAATATAGCGA
LOC_Os11g47830
Os.14083.1.S1_at--269--311Chr11:28289308..28289332 (25 bp)
ATAGCGATCGCCGTGATGCTTTCAT
LOC_Os11g47830
Os.14083.1.S1_at--181--5991Chr11:28288338..28288360 (23 bp)
GAGACACCGCCGTCAGCCGAATGGG
LOC_Os11g47830
Os.14083.1.S1_at--689--4411Chr11:28288272..28288296 (25 bp)
GCCAGCAGCAACTAGACTCTTCTGT
LOC_Os11g47830
Os.14083.1.S1_at--735--5711Chr11:28288258..28288282 (25 bp)
GACTCTTCTGTTTATAGCTAGACTA
LOC_Os11g47830
Os.14083.1.S1_at--857--5311Chr11:28288229..28288253 (25 bp)
GAAGGTGCGCTCAATATTTATGTCT
LOC_Os11g47830
Os.14083.1.S1_at--826--10411Chr11:28288205..28288229 (25 bp)
TTATCTCTTGTACATGTTGCGTGCA
LOC_Os11g47830
Os.14083.1.S1_at--862--7711Chr11:28288027..28288051 (25 bp)
GGGTGTACGGTGACTCCATCTGTCC
LOC_Os11g47830
Os.14083.1.S1_at--1065--471Chr11:28288009..28288034 (25 bp)
ATCTGTCCGGAGTAACTAACACTGT
LOC_Os11g47830
Os.14083.1.S1_at--195--8791Chr11:28287930..28287954 (25 bp)
TGTTTTGGATCCCTCTTTAAGAAAT
LOC_Os11g47830
Target Sequence 
AAGGAGATGACCAGTATGCTTCCCCNCAGAGAAAGGAGGAGCAGCAANCAAAATCATCACGACAGACTAAAGAACATGAT
GAGGAGCGAAGATCCTGCACTCCTGAATATAGCGATCGCCGTGATGCTTTCATCGGTCATGATGAGACACCGCCGTCAGC
CGAATGGGGGAGTAAACTGGGCACNTGTGCAGGTTATCTCCAACACCGCCGCCAGCAGCAACTAGACTCTTCTGTTTATA
GCTAGACTAGATTGAAGGTGCGCTCAATATTTATGTCTTATCTCTTGTACATGTTGCGTGCATTTGGATTGATTATTCAC
ACATAGAGTATACATAGCAGCAAAATGAGGGATGGTCGACGATGAACGTTTCTTNTNNNNNNNANAGTACTCCNGTATGA
TATTATGGTGTANAANNANNNANNNGGANNGNNATGGGCTTTGGATAGTCGTTGTGGGGTGTACGGTGACTCCATCTGTC
CGGAGTAACTAACACTGTAGAGGTGAGGTGGAGTGAATACTAGTAAGAAGAGTAAATTTTAATTAGTTGTTTTGTTTTGG
ATCCCTCTTTAAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis