Browse Element(s) Details


Os.30200.1.S1_at

Description gb:AK109134.1
DB_XREF= gi:32994343
TID=Os.30200.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-E01, full insert sequence.
FL= gb:AK109134.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4784011/11rhomboid family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47830Os.14083.1.S1_at11/1111+28287909..28294907RNA recognition motif family protein, expressed
LOC_Os11g47840Os.30200.1.S1_at11/1111+28295527..28299353rhomboid family protein, putative, expressed
LOC_Os11g47850NANA11+28302815..28303450transposon protein, putative, unclassified
LOC_Os11g47860OsAffx.19432.1.S1_at11/1111+28306549..28307016hypothetical protein
LOC_Os11g47870Os.27419.1.S1_at11/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47870OsAffx.7080.1.S1_x_at2/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47879NANA11+28322950..28323295NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30200.1.S1_at--1005--351Chr11:28296229..28296253 (25 bp)
ATAATGCAAACGACCACTGCTCTTG
LOC_Os11g47840
Os.30200.1.S1_at--371--9091Chr11:28296212..28296236 (25 bp)
TGCTCTTGGTGTCACTATCTCAGCT
LOC_Os11g47840
Os.30200.1.S1_at--1037--10131Chr11:28296197..28296221 (25 bp)
TATCTCAGCTGTGTTCCTACGAAAA
LOC_Os11g47840
Os.30200.1.S1_at--37--2551Chr11:28296161..28296185 (25 bp)
AACTCATCACCAACATATTGCACGG
LOC_Os11g47840
Os.30200.1.S1_at--877--2471Chr11:28295768..28295792 (25 bp)
AACGTACACCGGAGCTACCTTATAG
LOC_Os11g47840
Os.30200.1.S1_at--1048--9971Chr11:28295753..28295777 (25 bp)
TACCTTATAGCGGATGCCACGCAAG
LOC_Os11g47840
Os.30200.1.S1_at--551--1271Chr11:28295725..28295749 (25 bp)
AGATCAACCAACTCTGCAACCAACT
LOC_Os11g47840
Os.30200.1.S1_at--1139--1191Chr11:28295696..28295720 (25 bp)
AGTTAGCAGAATCTTGGTTCCCTCC
LOC_Os11g47840
Os.30200.1.S1_at--174--3811Chr11:28295675..28295699 (25 bp)
CTCCCTGAGTTGATCTGCTTGTAAA
LOC_Os11g47840
Os.30200.1.S1_at--82--2071Chr11:28295628..28295652 (25 bp)
ACATTTTTCATTCTTCGTGTACATG
LOC_Os11g47840
Os.30200.1.S1_at--155--4051Chr11:28295533..28295557 (25 bp)
CGATTGAATCTATGCAGAGTGCCAT
LOC_Os11g47840
Target Sequence 
ATAATGCAAACGACCACTGCTCTTGGTGTCACTATCTCAGCTGTGTTCCTACGAAAAGATGGAAATGCAACTCATCACCA
ACATATTGCACGGTAATGCAACNAGCGAATACATTAAACTTGACATGTGAAGGCACAAACGTACACCGGAGCTACCTTAT
AGCGGATGCCACGCAAGATAAGATCAACCAACTCTGCAACCAACTTTGCAGTTAGCAGAATCTTGGTTCCCTCCCTGAGT
TGATCTGCTTGTAAAAATACTACTACTAGTAGTATATACATTTTTCATTCTTCGTGTACATGAATACATCATGTTTGACA
GACAGAGAATAGAAAAGAATTTGCTGTACATATGAAGAAAAGAATACTACACCGATTGAATCTATGCAGAGTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis