Browse Element(s) Details


Os.27419.1.S1_at

Description gb:AK102199.1
DB_XREF= gi:32987408
TID=Os.27419.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087D22, full insert sequence.
FL= gb:AK102199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4787011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47830Os.14083.1.S1_at11/1111+28287909..28294907RNA recognition motif family protein, expressed
LOC_Os11g47840Os.30200.1.S1_at11/1111+28295527..28299353rhomboid family protein, putative, expressed
LOC_Os11g47850NANA11+28302815..28303450transposon protein, putative, unclassified
LOC_Os11g47860OsAffx.19432.1.S1_at11/1111+28306549..28307016hypothetical protein
LOC_Os11g47870Os.27419.1.S1_at11/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47870OsAffx.7080.1.S1_x_at2/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47879NANA11+28322950..28323295NA
LOC_Os11g47890OsAffx.7080.1.S1_x_at2/1111+28329630..28331546GRAS family transcription factor containing protein, expressed
LOC_Os11g47900Os.51719.1.S1_at11/1111+28333372..28335505GRAS family transcription factor containing protein, expressed
LOC_Os11g47910NANA11+28337184..28338971GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27419.1.S1_at--909--9191Chr11:28314067..28314091 (25 bp)
TGCCATTGCAGCCTCAGGTGGTTGA
LOC_Os11g47870
Os.27419.1.S1_at--356--531Chr11:28314138..28314162 (25 bp)
ATCGACGTCGATCACAATTGGCTGC
LOC_Os11g47870
Os.27419.1.S1_at--372--7211Chr11:28314144..28314168 (25 bp)
GTCGATCACAATTGGCTGCTGCAGG
LOC_Os11g47870
Os.27419.1.S1_at--101--9431Chr11:28314215..28314239 (25 bp)
TCGTGATCACAAATCCCTCTTTTAG
LOC_Os11g47870
Os.27419.1.S1_at--821--5471Chr11:28314280..28314304 (25 bp)
GAACTAGATATATACTCCTACATGA
LOC_Os11g47870
Os.27419.1.S1_at--258--10191Chr11:28314447..28314471 (25 bp)
TATAGTTTAGGCCTGTGTGCTCTTC
LOC_Os11g47870
Os.27419.1.S1_at--854--8691Chr11:28314462..28314486 (25 bp)
TGTGCTCTTCTGTTTGCTGACAATC
LOC_Os11g47870
Os.27419.1.S1_at--668--6851Chr11:28314473..28314497 (25 bp)
GTTTGCTGACAATCTACTATAGTGT
LOC_Os11g47870
Os.27419.1.S1_at--440--1111Chr11:28314493..28314517 (25 bp)
AGTGTTTTCACTATTGTCGTGTTTG
LOC_Os11g47870
Os.27419.1.S1_at--1036--6851Chr11:28314513..28314537 (25 bp)
GTTTGATGATATGTTCTCTTTGTCA
LOC_Os11g47870
Os.27419.1.S1_at--1154--7111Chr11:28314534..28314558 (25 bp)
GTCATGTTTAATTCACTTCCTTTTG
LOC_Os11g47870
Target Sequence 
TGCCATTGCAGCCTCAGGTGGTTGAGCTTGTGAGAGACAAGGTCAAAAAACTCTATCANNAAGACTTCGTCATCGACGTC
GATCACAATTGGCTGCTGCAGGGATGGAAGGGGCGGATACTGTACGCCATGTCCNCATGGGTAGCTGATCGTGATCACAA
ATCCCTCTTTTAGTTCAAGATTTAATTATCTGCTTCAATTACTTACAAATTGAGAACTAGATATATACTCCTACATGATA
TAATATCTTCATTTGCAATGTAAAGCTAGCTACATAAGATTTTGATATATATATATATATATATATATATATATATATAT
ATATATATATATATTTCCAGCATAAATAAATTGAGAACTTCATTTTTTTTTTTTGCTACTATAGTTTAGGCCTGTGTGCT
CTTCTGTTTGCTGACAATCTACTATAGTGTTTTCACTATTGTCGTGTTTGATGATATGTTCTCTTTGTCATGTTTAATTC
ACTTCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis