Browse Element(s) Details


Os.51719.1.S1_at

Description gb:AK063519.1
DB_XREF= gi:32973537
TID=Os.51719.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H06, full insert sequence.
FL= gb:AK063519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4790011/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47870Os.27419.1.S1_at11/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47870OsAffx.7080.1.S1_x_at2/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47879NANA11+28322950..28323295NA
LOC_Os11g47890OsAffx.7080.1.S1_x_at2/1111+28329630..28331546GRAS family transcription factor containing protein, expressed
LOC_Os11g47900Os.51719.1.S1_at11/1111+28333372..28335505GRAS family transcription factor containing protein, expressed
LOC_Os11g47910NANA11+28337184..28338971GRAS family transcription factor containing protein
LOC_Os11g47920NANA11+28341012..28342793GRAS family transcription factor containing protein
LOC_Os11g47930Os.14762.2.S1_x_at6/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.14762.1.S1_x_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.14762.3.S1_x_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930OsAffx.24274.1.S1_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.18172.1.S1_s_at1/1111+28343996..28346570expressed protein
LOC_Os11g47940NANA11+28355908..28359106hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51719.1.S1_at--1150--4191Chr11:28334933..28334957 (25 bp)
CCCGACGTGTTCATCCATGGCATCA
LOC_Os11g47900
Os.51719.1.S1_at--550--4951Chr11:28334952..28334976 (25 bp)
GCATCATGAACGGAGCCTACGGCGC
LOC_Os11g47900
Os.51719.1.S1_at--813--5011Chr11:28335025..28335049 (25 bp)
GCAGTTCGACCTGCTGGACGCGACG
LOC_Os11g47900
Os.51719.1.S1_at--13--8331Chr11:28335106..28335130 (25 bp)
GGCTCTGAACGTGATCGCCTGCGAG
LOC_Os11g47900
Os.51719.1.S1_at--505--6111Chr11:28335250..28335274 (25 bp)
GAGGGACAAGTACCACAAGGACTTC
LOC_Os11g47900
Os.51719.1.S1_at--408--4071Chr11:28335283..28335307 (25 bp)
CGAGGATCAACGCTGGTTGCTGCAC
LOC_Os11g47900
Os.51719.1.S1_at--449--8631Chr11:28335344..28335368 (25 bp)
TGGGTTGCCCAACACTAGCTCTTAG
LOC_Os11g47900
Os.51719.1.S1_at--699--9971Chr11:28335359..28335383 (25 bp)
TAGCTCTTAGCCTCTTACCAATTAT
LOC_Os11g47900
Os.51719.1.S1_at--286--771Chr11:28335423..28335447 (25 bp)
ATGTCTATGATCGATGTGGACCATG
LOC_Os11g47900
Os.51719.1.S1_at--423--7511Chr11:28335438..28335462 (25 bp)
GTGGACCATGGTTGAGTAAACCCTA
LOC_Os11g47900
Os.51719.1.S1_at--117--10811Chr11:28335474..28335498 (25 bp)
TTGTATCACATTTTTGCTCCTCCTT
LOC_Os11g47900
Target Sequence 
CCCGACGTGTTCATCCATGGCATCATGAACGGAGCCTACGGCGCGACCTACTTCCTGACACGCTTCCGGGAGGCTCTCTA
CTACTACGCGGCGCAGTTCGACCTGCTGGACGCGACGGTGGGGCGGGAGAGCCACGAGCGGATGCTGGTGGAGCGGGACA
TCTTCGGGCGGGCGGCTCTGAACGTGATCGCCTGCGAGGGCGCGGAGCGGGTGGAGCGGCCGGAGATGTACAAGCAGTGG
CAGGCGAGGAACCAGCGCGCGGGGCTGAGGCAGCTGCCGCTGAATCCGCAGGTTGTGAGGCTGGTGCTGGACAAGGTGAG
GGACAAGTACCACAAGGACTTCGTGGTGGACGAGGATCAACGCTGGTTGCTGCACAGGTGGAAGGGCCGCGTGCTCTACG
CCTTGTCCACTTGGGTTGCCCAACACTAGCTCTTAGCCTCTTACCAATTATTTATACCAATTTTCAGATATGCACATCAT
AAGTACAACCATGTCTATGATCGATGTGGACCATGGTTGAGTAAACCCTATTGTATGTTTCTTGTATCACATTTTTGCTC
CTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis