Browse Element(s) Details


Os.18172.1.S1_s_at

Description gb:AK102256.1
DB_XREF= gi:32987465
TID=Os.18172.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088I10, full insert sequence.
FL= gb:AK102256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1597011/11expressed protein
LOC_Os11g479301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15939NANA2+9034675..9034982NA
LOC_Os02g15950Os.51944.1.S1_at11/112+9042090..9044994F-box family protein, putative, expressed
LOC_Os02g15960OsAffx.2636.1.S1_at11/112+9051331..9051698hypothetical protein
LOC_Os02g15970Os.18172.1.S1_s_at11/112+9052731..9056389expressed protein
LOC_Os02g15970Os.18172.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970OsAffx.24274.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970Os.14762.2.S1_x_at1/112+9052731..9056389expressed protein
LOC_Os02g15980OsAffx.12064.1.S1_at11/112+9064649..9068427expressed protein
LOC_Os02g15990NANA2+9075212..9079453retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18172.1.S1_s_at--403--6351Chr02:9055251..9055275 (25 bp)
GATGCGAGTCTACTGCGCTGCTGAT
LOC_Os02g15970
Os.18172.1.S1_s_at--477--1411Chr02:9054316..9054340 (25 bp)
AGAAATATCACCCTTACTACCCTCA
LOC_Os02g15970
Os.18172.1.S1_s_at--673--2672Chr11:28344834..28344858 (25 bp)
AAGCTGCCGTTATGTGCCAACTTGC
LOC_Os11g47930
Os.18172.1.S1_s_at--432--4211Chr02:9054049..9054073 (25 bp)
CCCCAAGGTGGTTTGATGAGGAAGA
LOC_Os02g15970
Os.18172.1.S1_s_at--314--5911Chr02:9054026..9054050 (25 bp)
GAGCTACCAAAGCAATGACAGCCTG
LOC_Os02g15970
Os.18172.1.S1_s_at--342--1251Chr02:9053045..9053069 (25 bp)
AGTTGGACTTGTATGCAGCTCTGAA
LOC_Os02g15970
Os.18172.1.S1_s_at--518--5231Chr02:9053020..9053044 (25 bp)
GAATATAACATGCATCTTTGCCAAC
LOC_Os02g15970
Os.18172.1.S1_s_at--1146--431Chr02:9053007..9053031 (25 bp)
ATCTTTGCCAACTATCCACCAAGGA
LOC_Os02g15970
Os.18172.1.S1_s_at--747--571Chr02:9052994..9053018 (25 bp)
ATCCACCAAGGACAACTGCAGTTGT
LOC_Os02g15970
Os.18172.1.S1_s_at--248--8751Chr02:9052972..9052996 (25 bp)
TGTAAAATTTTCAGCCAACTTCCAG
LOC_Os02g15970
Os.18172.1.S1_s_at--542--9672Chr03:27465002..27465026 (25 bp)
TCAGCCAACTTCCAGCTGTCAGGTA
NONE
Target Sequence 
GATGCGAGTCTACTGCGCTGCTGATGAAGGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
GTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTACAATCTTGACAGCTTGGCGTCTATGCCGCTGT
AATCCTCTTGGTGGTCATGGATATGATCCCCCAAGGTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGGTGA
AAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTGCCAACTATCCACCAAGGACAACTGCAGTTGTA
AAATTTTCAGCCAACTTCCAGCTGTCAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18172.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis